Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_16s0022g00510.t01 | |
| VIT_17s0000g06020.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G28730.1 | VIT_17s0000g06020.t01 | AT3G47620.1 | 21798944 |
| AT4G28730.1 | VIT_16s0022g00510.t01 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P11150_001 | Banana | cytosol, plastid | 48.31 | 69.92 |
| KRH32275 | Soybean | plastid | 62.36 | 66.87 |
| KRH19662 | Soybean | plastid | 59.55 | 63.86 |
| HORVU7Hr1G064020.2 | Barley | extracellular | 27.53 | 60.49 |
| KRH55649 | Soybean | plastid | 55.62 | 60.37 |
| Solyc06g083690.2.1 | Tomato | plastid | 61.8 | 60.11 |
| CDX92892 | Canola | plastid | 57.87 | 57.87 |
| Zm00001d031856_P002 | Maize | plastid | 53.93 | 57.48 |
| CDY50922 | Canola | plastid | 57.87 | 57.22 |
| AT4G28730.1 | Thale cress | plastid | 55.06 | 56.32 |
| Bra024183.1-P | Field mustard | plastid | 52.81 | 55.95 |
| OQU80669 | Sorghum | mitochondrion, plastid | 47.75 | 55.19 |
| CDY68269 | Canola | plastid | 55.06 | 54.75 |
| Bra010351.1-P | Field mustard | plastid | 55.06 | 54.75 |
| CDY35215 | Canola | plastid | 52.81 | 54.34 |
| Bra011056.1-P | Field mustard | plastid | 52.81 | 54.34 |
| CDY06875 | Canola | plastid | 53.37 | 54.29 |
| CDX97456 | Canola | plastid | 55.06 | 54.14 |
| TraesCS7B01G185700.1 | Wheat | plastid | 51.69 | 54.12 |
| TraesCS7D01G289300.1 | Wheat | plastid | 51.12 | 53.53 |
| TraesCS7A01G293400.1 | Wheat | plastid | 51.12 | 53.53 |
| CDY05731 | Canola | plastid | 52.25 | 53.45 |
| CDY31980 | Canola | plastid | 51.12 | 52.6 |
| Zm00001d049886_P001 | Maize | plastid | 51.69 | 51.69 |
| Bra036458.1-P | Field mustard | plastid | 46.63 | 49.7 |
| AT2G20270.2 | Thale cress | plastid | 50.0 | 43.2 |
| VIT_14s0066g00960.t01 | Wine grape | cytosol | 27.53 | 42.98 |
| PGSC0003DMT400051717 | Potato | plastid | 61.24 | 41.44 |
| VIT_17s0000g08670.t01 | Wine grape | cytosol | 26.4 | 37.9 |
| Os08t0565800-01 | Rice | cytosol | 35.39 | 36.0 |
| VIT_11s0052g00500.t01 | Wine grape | endoplasmic reticulum, extracellular | 25.84 | 33.82 |
| VIT_04s0023g02800.t01 | Wine grape | extracellular, vacuole | 23.6 | 32.81 |
| HORVU7Hr1G064050.1 | Barley | mitochondrion | 25.28 | 26.32 |
Protein Annotations
| EntrezGene:100265126 | wikigene:100265126 | MapMan:18.8.2 | Gene3D:3.40.30.10 | ProteinID:CCB60205 | ProteinID:CCB60205.1 |
| UniProt:F6HZT9 | EMBL:FN596502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 | GO:GO:0015035 |
| GO:GO:0019725 | GO:GO:0022900 | GO:GO:0045454 | GO:GO:0055114 | InterPro:Glutaredoxin | InterPro:Glutaredoxin_euk/vir |
| InterPro:Glutaredoxin_subgr | InterPro:IPR002109 | EntrezGene:LOC100265126 | wikigene:LOC100265126 | PFAM:PF00462 | PRINTS:PR00160 |
| PFscan:PS51354 | PANTHER:PTHR10168 | PANTHER:PTHR10168:SF14 | SUPFAM:SSF52833 | TIGR:TC60408 | TIGRFAMs:TIGR02180 |
| InterPro:Thioredoxin-like_sf | UniParc:UPI0001983AD6 | ArrayExpress:VIT_07s0005g04860 | EnsemblPlantsGene:VIT_07s0005g04860 | EnsemblPlants:VIT_07s0005g04860.t01 | unigene:Vvi.17941 |
| RefSeq:XP_002267052 | RefSeq:XP_002267052.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7:+:8118676..8137173
Molecular Weight (calculated)
19546.4 Da
IEP (calculated)
9.909
GRAVY (calculated)
-0.266
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASISHFAP FSSSRGFSPS SSSSPLLLSY LLTRSVQFHS NHIPRSFGIG HAGNRRYGPV LVRAMASSFG SRLEETVKKT VDENPVVVYS KTWCSYSSEV
101: KSLFKRLGVE PFVIELDEMG PQGPQLQKVL ERLTGQHTVP NVFIGGKHIG GCTDTVKLYR KGELEPLLSE ASTRKTES
101: KSLFKRLGVE PFVIELDEMG PQGPQLQKVL ERLTGQHTVP NVFIGGKHIG GCTDTVKLYR KGELEPLLSE ASTRKTES
001: MAVTAFNTLK LVSSSLDPIP SVSCSSYSFS LIYVGSPYKR CLKQSCSVRA MTSSSSAASS SSSSFGSRME ESIRKTVTEN TVVIYSKTWC SYCTEVKTLF
101: KRLGVQPLVV ELDQLGPQGP QLQKVLERLT GQHTVPNVFV CGKHIGGCTD TVKLNRKGDL ELMLAEANGK NGQS
101: KRLGVQPLVV ELDQLGPQGP QLQKVLERLT GQHTVPNVFV CGKHIGGCTD TVKLNRKGDL ELMLAEANGK NGQS
Arabidopsis Description
GRXC5GrxC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UXL4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.