Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50922 | Canola | plastid | 83.91 | 81.11 |
| CDX92892 | Canola | plastid | 82.76 | 80.9 |
| Bra024183.1-P | Field mustard | plastid | 77.01 | 79.76 |
| CDX97456 | Canola | plastid | 81.61 | 78.45 |
| CDY68269 | Canola | plastid | 79.89 | 77.65 |
| Bra010351.1-P | Field mustard | plastid | 79.89 | 77.65 |
| CDY06875 | Canola | plastid | 77.59 | 77.14 |
| Bra011056.1-P | Field mustard | plastid | 75.29 | 75.72 |
| CDY35215 | Canola | plastid | 75.29 | 75.72 |
| GSMUA_Achr1P11150_001 | Banana | cytosol, plastid | 48.28 | 68.29 |
| HORVU7Hr1G064020.2 | Barley | extracellular | 28.16 | 60.49 |
| KRH32275 | Soybean | plastid | 54.6 | 57.23 |
| OQU80669 | Sorghum | mitochondrion, plastid | 48.85 | 55.19 |
| VIT_07s0005g04860.t01 | Wine grape | plastid | 56.32 | 55.06 |
| KRH55649 | Soybean | plastid | 51.72 | 54.88 |
| KRH19662 | Soybean | plastid | 51.72 | 54.22 |
| Zm00001d031856_P002 | Maize | plastid | 51.72 | 53.89 |
| TraesCS7A01G293400.1 | Wheat | plastid | 52.3 | 53.53 |
| TraesCS7B01G185700.1 | Wheat | plastid | 52.3 | 53.53 |
| TraesCS7D01G289300.1 | Wheat | plastid | 52.3 | 53.53 |
| Solyc06g083690.2.1 | Tomato | plastid | 55.75 | 53.01 |
| Zm00001d049886_P001 | Maize | plastid | 52.3 | 51.12 |
| AT2G20270.2 | Thale cress | plastid | 51.72 | 43.69 |
| AT5G63030.1 | Thale cress | cytosol | 26.44 | 36.8 |
| Os08t0565800-01 | Rice | cytosol | 36.78 | 36.57 |
| PGSC0003DMT400051717 | Potato | plastid | 55.17 | 36.5 |
| AT5G20500.1 | Thale cress | endoplasmic reticulum | 25.86 | 33.33 |
| AT5G40370.2 | Thale cress | cytosol | 25.29 | 32.35 |
| HORVU7Hr1G064050.1 | Barley | mitochondrion | 29.31 | 29.82 |
| AT1G77370.2 | Thale cress | extracellular | 23.56 | 26.28 |
Protein Annotations
| MapMan:18.8.2 | Gene3D:3.40.30.10 | PDB:3RHB | PDB:3RHC | EntrezGene:828994 | UniProt:A0A178UXL4 |
| ProteinID:AEE85535.1 | EMBL:AK118672 | ArrayExpress:AT4G28730 | EnsemblPlantsGene:AT4G28730 | RefSeq:AT4G28730 | TAIR:AT4G28730 |
| RefSeq:AT4G28730-TAIR-G | EnsemblPlants:AT4G28730.1 | TAIR:AT4G28730.1 | Unigene:At.31993 | EMBL:BT003703 | ProteinID:CAA22979.1 |
| ProteinID:CAB81461.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004362 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 |
| GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0016043 |
| GO:GO:0016226 | GO:GO:0019725 | GO:GO:0022900 | GO:GO:0045454 | GO:GO:0055114 | GO:GO:0098869 |
| InterPro:Glutaredoxin | InterPro:Glutaredoxin_euk/vir | InterPro:Glutaredoxin_subgr | InterPro:IPR002109 | RefSeq:NP_194602.2 | ProteinID:OAO97844.1 |
| PFAM:PF00462 | PO:PO:0000293 | PRINTS:PR00160 | PFscan:PS51354 | PANTHER:PTHR10168 | PANTHER:PTHR10168:SF14 |
| UniProt:Q8GWS0 | SUPFAM:SSF52833 | TIGRFAMs:TIGR02180 | InterPro:Thioredoxin-like_sf | UniParc:UPI000000C113 | SEG:seg |
Description
GRXC5GrxC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UXL4]
Coordinates
chr4:+:14199043..14200903
Molecular Weight (calculated)
18814.6 Da
IEP (calculated)
9.091
GRAVY (calculated)
-0.113
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVTAFNTLK LVSSSLDPIP SVSCSSYSFS LIYVGSPYKR CLKQSCSVRA MTSSSSAASS SSSSFGSRME ESIRKTVTEN TVVIYSKTWC SYCTEVKTLF
101: KRLGVQPLVV ELDQLGPQGP QLQKVLERLT GQHTVPNVFV CGKHIGGCTD TVKLNRKGDL ELMLAEANGK NGQS
101: KRLGVQPLVV ELDQLGPQGP QLQKVLERLT GQHTVPNVFV CGKHIGGCTD TVKLNRKGDL ELMLAEANGK NGQS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.