Factsheet for Zm00001d049886_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018045_P001
Zm00001d037221_P001
Zm00001d044836_P001
Zm00001d044874_P001
Zm00001d052194_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28730.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT4G28730.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT4G28730.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT4G28730.1	Zm00001d052256_P001	AT3G47620.1	21798944
AT4G28730.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT4G28730.1	Zm00001d052194_P001	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80669	Sorghum	mitochondrion, plastid	78.09	90.26
Zm00001d031856_P002	Maize	plastid	83.15	88.62
TraesCS7B01G185700.1	Wheat	plastid	74.16	77.65
TraesCS7A01G293400.1	Wheat	plastid	73.6	77.06
TraesCS7D01G289300.1	Wheat	plastid	73.6	77.06
GSMUA_Achr1P11150_001	Banana	cytosol, plastid	52.81	76.42
HORVU7Hr1G064020.2	Barley	extracellular	30.9	67.9
CDX92892	Canola	plastid	52.81	52.81
CDY50922	Canola	plastid	53.37	52.78
Solyc06g083690.2.1	Tomato	plastid	53.93	52.46
AT4G28730.1	Thale cress	plastid	51.12	52.3
CDX97456	Canola	plastid	52.81	51.93
KRH19662	Soybean	plastid	48.31	51.81
KRH32275	Soybean	plastid	48.31	51.81
Bra024183.1-P	Field mustard	plastid	48.88	51.79
VIT_07s0005g04860.t01	Wine grape	plastid	51.69	51.69
CDY68269	Canola	plastid	51.69	51.4
Bra010351.1-P	Field mustard	plastid	51.69	51.4
CDY06875	Canola	plastid	49.44	50.29
CDY35215	Canola	plastid	47.75	49.13
Bra011056.1-P	Field mustard	plastid	47.75	49.13
KRH55649	Soybean	plastid	44.94	48.78
CDY05731	Canola	plastid	44.38	45.4
CDY31980	Canola	plastid	43.26	44.51
HORVU7Hr1G064050.1	Barley	mitochondrion	40.45	42.11
Bra036458.1-P	Field mustard	plastid	39.33	41.92
Os08t0565800-01	Rice	cytosol	39.89	40.57
Zm00001d046900_P003	Maize	mitochondrion	29.78	39.26
AT2G20270.2	Thale cress	plastid	41.57	35.92
PGSC0003DMT400051717	Potato	plastid	52.81	35.74
Zm00001d003081_P003	Maize	mitochondrion	25.28	34.35
Zm00001d017240_P001	Maize	cytosol, extracellular	21.35	28.79
Zm00001d017417_P001	Maize	cytosol	19.66	26.92

Protein Annotations

EntrezGene:100273447	MapMan:18.8.2	Gene3D:3.40.30.10	ProteinID:AQK51521.1	UniProt:B4FRD4	EMBL:BT039672
EMBL:BT041151	EMBL:EU954550	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:Glutaredoxin_euk/vir
InterPro:Glutaredoxin_subgr	InterPro:IPR002109	PFAM:PF00462	PRINTS:PR00160	PFscan:PS51354	PANTHER:PTHR10168
PANTHER:PTHR10168:SF14	SUPFAM:SSF52833	TIGRFAMs:TIGR02180	InterPro:Thioredoxin-like_sf	UniParc:UPI00017B7AEE	EnsemblPlantsGene:Zm00001d049886
EnsemblPlants:Zm00001d049886_P001	EnsemblPlants:Zm00001d049886_T001	SEG:seg	:	:	:

Description

Glutaredoxin-C5 chloroplastic

Coordinates

chr4:+:50576947..50586364

Molecular Weight (calculated)

19232.4 Da

IEP (calculated)

9.919

GRAVY (calculated)

-0.223

Length

178 amino acids

Sequence
(BLAST)

001: MPPPPPPPQQ QQQQSGMTLC RLPTATLGLP LSLPCLLPRS RPRLCFAARH ARAVAARASS SSPSPDSSFG SRMEESVKKT VADNPVVIYS KSWCSYCMEV
101: KALFKRIGVQ PHVIELDHLG AQGPQIQKVL ERLTGQSTVP NVFIGGKHVG GCTDTVKLYR KGELASMLSG LDININNS

Best Arabidopsis Sequence Match ( AT4G28730.1 )
(BLAST)

001: MAVTAFNTLK LVSSSLDPIP SVSCSSYSFS LIYVGSPYKR CLKQSCSVRA MTSSSSAASS SSSSFGSRME ESIRKTVTEN TVVIYSKTWC SYCTEVKTLF
101: KRLGVQPLVV ELDQLGPQGP QLQKVLERLT GQHTVPNVFV CGKHIGGCTD TVKLNRKGDL ELMLAEANGK NGQS

Arabidopsis Description

GRXC5GrxC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UXL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.