Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 6
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| mitochondrion:
14690504
plastid: 22065420 plastid: 23198870 mitochondrion: 27297264 mitochondrion: 29575040 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
23198870
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID:
29575040
doi
Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU85385 | Sorghum | mitochondrion | 83.94 | 82.81 |
| Os02t0758000-01 | Rice | plastid | 74.77 | 74.09 |
| TraesCS6B01G346700.1 | Wheat | mitochondrion | 63.76 | 64.65 |
| TraesCS6A01G316200.1 | Wheat | mitochondrion | 62.39 | 63.26 |
| TraesCS6D01G295500.1 | Wheat | mitochondrion | 61.93 | 62.5 |
| GSMUA_Achr10P... | Banana | mitochondrion | 49.54 | 50.0 |
| VIT_02s0154g00480.t01 | Wine grape | mitochondrion, plastid | 41.74 | 45.27 |
| Solyc08g078700.2.1 | Tomato | plastid | 43.12 | 44.76 |
| PGSC0003DMT400012249 | Potato | mitochondrion | 43.12 | 44.55 |
| KRH39841 | Soybean | mitochondrion | 29.82 | 44.22 |
| KRH23958 | Soybean | mitochondrion | 41.74 | 42.92 |
| VIT_02s0154g00490.t01 | Wine grape | mitochondrion | 39.45 | 42.79 |
| AT5G51440.1 | Thale cress | mitochondrion | 39.91 | 41.43 |
| CDY00476 | Canola | mitochondrion | 30.28 | 40.99 |
| CDX99920 | Canola | mitochondrion | 29.82 | 40.62 |
| Bra029174.1-P | Field mustard | mitochondrion | 36.7 | 40.61 |
| CDY38862 | Canola | mitochondrion | 36.24 | 40.31 |
| AT4G25200.1 | Thale cress | mitochondrion | 38.07 | 39.52 |
| VIT_16s0022g00510.t01 | Wine grape | mitochondrion | 37.61 | 39.42 |
| Bra028253.1-P | Field mustard | mitochondrion | 28.9 | 39.13 |
| Zm00001d044874_P001 | Maize | cytosol, plastid | 37.16 | 38.94 |
| HORVU6Hr1G077710.3 | Barley | cytosol | 48.62 | 38.83 |
| CDX89437 | Canola | mitochondrion | 37.61 | 38.5 |
| Bra013872.1-P | Field mustard | mitochondrion | 37.61 | 38.5 |
| CDY03368 | Canola | mitochondrion | 37.61 | 38.5 |
| CDY32630 | Canola | mitochondrion | 28.9 | 37.06 |
| Solyc08g078710.1.1 | Tomato | mitochondrion | 23.85 | 26.53 |
| PGSC0003DMT400012247 | Potato | mitochondrion | 22.48 | 25.13 |
| PGSC0003DMT400012246 | Potato | plastid | 16.97 | 21.76 |
| Solyc08g078720.2.1 | Tomato | mitochondrion | 15.6 | 20.24 |
Protein Annotations
| MapMan:19.1.8.8 | Gene3D:2.60.40.790 | EntrezGene:542602 | InterPro:A-crystallin/Hsp20_dom | ProteinID:AAV32521.1 | EMBL:AF035460 |
| ProteinID:AQK56431.1 | EMBL:EU961071 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006950 | GO:GO:0006970 |
| GO:GO:0008150 | GO:GO:0009408 | GO:GO:0009628 | GO:GO:0051082 | InterPro:HSP20 | InterPro:HSP20-like_chaperone |
| InterPro:IPR002068 | InterPro:IPR008978 | UniProt:O64960 | PFAM:PF00011 | PFscan:PS01031 | PANTHER:PTHR11527 |
| PANTHER:PTHR11527:SF176 | SUPFAM:SSF49764 | UniParc:UPI00000A372C | EnsemblPlantsGene:Zm00001d052194 | EnsemblPlants:Zm00001d052194_P001 | EnsemblPlants:Zm00001d052194_T001 |
| SEG:seg | : | : | : | : | : |
Description
heat shock protein2223.6 kDa heat shock protein mitochondrial
Coordinates
chr4:-:182772609..182773786
Molecular Weight (calculated)
23817.3 Da
IEP (calculated)
6.982
GRAVY (calculated)
-0.469
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MASIVASRRA VPLVRALEKL IAASSAPGTG SALRPVAVAG GLRGYNTGAP LRRYEGAESE DDSVREYDGR HGGRDYAVPS LFSDIFRDPL SAPHSIGRLL
101: NLVDDLAVAA PGRAVRRGWN AKEDEEALHL RVDMPGLGKE HVKVWAEQNS LVIKGEGEKE DSEDEAAPPP RYSGRIELAP EVYRMDKIKA EMKNGVLKVV
201: VPKVKEQQRK DVFQVNVE
101: NLVDDLAVAA PGRAVRRGWN AKEDEEALHL RVDMPGLGKE HVKVWAEQNS LVIKGEGEKE DSEDEAAPPP RYSGRIELAP EVYRMDKIKA EMKNGVLKVV
201: VPKVKEQQRK DVFQVNVE
001: MASSSALALR RLLSSSTVAV PRALRAVRPV AASSRLFNTN AARNYEDGVD RNHHSNRHVS RHGGDFFSHI LDPFTPTRSL SQMLNFMDQV SEIPLVSATR
101: GMGASGVRRG WNVKEKDDAL HLRIDMPGLS REDVKLALEQ NTLVIRGEGE TEEGEDVSGD GRRFTSRIEL PEKVYKTDEI KAEMKNGVLK VVIPKIKEDE
201: RNNIRHINVD
101: GMGASGVRRG WNVKEKDDAL HLRIDMPGLS REDVKLALEQ NTLVIRGEGE TEEGEDVSGD GRRFTSRIEL PEKVYKTDEI KAEMKNGVLK VVIPKIKEDE
201: RNNIRHINVD
Arabidopsis Description
HSP23.523.5 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FGM9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.