Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d011752_P001 | Maize | cytosol | 65.96 | 68.89 |
| TraesCS3D01G283600.1 | Wheat | cytosol, plastid | 65.96 | 63.92 |
| Os01t0727700-00 | Rice | cytosol | 64.89 | 55.96 |
| KRH13257 | Soybean | mitochondrion | 25.53 | 48.98 |
| GSMUA_Achr7P24930_001 | Banana | plastid | 41.49 | 39.0 |
| GSMUA_Achr3P31830_001 | Banana | nucleus | 41.49 | 33.05 |
| CDY72609 | Canola | cytosol | 39.36 | 32.46 |
| Bra017599.1-P | Field mustard | cytosol | 39.36 | 32.46 |
| Bra012560.1-P | Field mustard | cytosol | 37.23 | 32.11 |
| CDX98601 | Canola | cytosol | 37.23 | 32.11 |
| GSMUA_Achr9P05750_001 | Banana | cytosol | 39.36 | 30.83 |
| CDX99403 | Canola | nucleus | 36.17 | 30.63 |
| KRH71505 | Soybean | cytosol | 31.91 | 30.3 |
| AT4G18980.1 | Thale cress | cytosol | 34.04 | 30.19 |
| Bra020981.1-P | Field mustard | nucleus | 35.11 | 30.0 |
| CDY09268 | Canola | nucleus | 35.11 | 30.0 |
| CDY01576 | Canola | nucleus | 35.11 | 30.0 |
| CDX76503 | Canola | nucleus | 35.11 | 30.0 |
| CDY35299 | Canola | nucleus | 43.62 | 29.93 |
| AT5G45630.1 | Thale cress | nucleus | 36.17 | 29.82 |
| CDX78911 | Canola | nucleus | 32.98 | 29.52 |
| CDX90198 | Canola | cytosol | 43.62 | 29.29 |
| CDX84328 | Canola | cytosol | 39.36 | 29.13 |
| CDY43682 | Canola | cytosol | 43.62 | 28.87 |
| CDY72186 | Canola | cytosol | 43.62 | 28.87 |
| Bra013366.1-P | Field mustard | nucleus | 35.11 | 28.7 |
| CDX94683 | Canola | cytosol | 41.49 | 28.68 |
| CDX94684 | Canola | cytosol | 41.49 | 28.68 |
| Bra005436.1-P | Field mustard | cytosol | 38.3 | 28.35 |
| CDY17236 | Canola | cytosol | 38.3 | 28.35 |
| AT2G34340.1 | Thale cress | nucleus | 40.43 | 27.94 |
| CDY68974 | Canola | nucleus | 40.43 | 27.94 |
| Bra030154.1-P | Field mustard | nucleus | 40.43 | 27.94 |
| CDY26321 | Canola | nucleus | 40.43 | 27.54 |
| CDX99846 | Canola | cytosol | 40.43 | 27.54 |
| Solyc03g005890.1.1 | Tomato | nucleus | 40.43 | 27.54 |
| Zm00001d010814_P001 | Maize | cytosol | 40.43 | 27.54 |
| PGSC0003DMT400035020 | Potato | nucleus | 40.43 | 27.14 |
| KRH21137 | Soybean | cytosol | 34.04 | 27.12 |
| Bra010823.1-P | Field mustard | nucleus | 39.36 | 27.01 |
| PGSC0003DMT400035019 | Potato | nucleus | 39.36 | 26.43 |
| AT1G29640.1 | Thale cress | cytosol | 39.36 | 26.43 |
| Zm00001d038814_P001 | Maize | cytosol, nucleus, plastid | 40.43 | 25.33 |
| Zm00001d043455_P001 | Maize | cytosol | 40.43 | 25.33 |
| Bra032329.1-P | Field mustard | nucleus | 41.49 | 18.93 |
| KRH11111 | Soybean | nucleus | 34.04 | 18.5 |
| Bra021903.1-P | Field mustard | nucleus | 28.72 | 12.44 |
Protein Annotations
| EnsemblPlants:Zm00001d043586_P001 | EnsemblPlants:Zm00001d043586_T001 | EnsemblPlantsGene:Zm00001d043586 | EntrezGene:107403152 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 |
| PANTHER:PTHR33083:SF20 | PFAM:PF04520 | ProteinID:ONM38523.1 | SEG:seg | UniParc:UPI0002212263 | UniProt:A0A1D6NDF7 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:204438188..204438472
Molecular Weight (calculated)
10212.0 Da
IEP (calculated)
9.777
GRAVY (calculated)
-0.632
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MSQDAAWAQA EREQRRPSTE PIGIPAISGA ARVAERETNQ LADDGDGEAV PPHVLLARRR AASSVCSGQG RTLKGRDLRR VRDSVLRMTG FIES
001: MAEEFDESEV VFSDGLSSVL HKENENRLFG SDMERKKTRR IKRTTTEKAS LSSSLPVSIP ENIFRRYVGK EEDEYSEEEY SEGGGEMIPP HIMIGRRIQG
101: GQMAFSVCSG SGRTLKGRDL SRVRNSVLRL TGFLEA
101: GQMAFSVCSG SGRTLKGRDL SRVRNSVLRL TGFLEA
Arabidopsis Description
At2g34340 [Source:UniProtKB/TrEMBL;Acc:O80783]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.