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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • plastid 4
  • cytosol 1
  • mitochondrion 1
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
Predotar:plastid
PProwler:plastid
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d001952_P001
Zm00001d003927_P001
Zm00001d004894_P001
Zm00001d008345_P003
Zm00001d010236_P001
Zm00001d016593_P001
Zm00001d018045_P001
Zm00001d018501_P001
Zm00001d020971_P002
Zm00001d026536_P002
Zm00001d028055_P001
Zm00001d030843_P001
Zm00001d037221_P001
Zm00001d037512_P001
Zm00001d038218_P001
Zm00001d040274_P001
Zm00001d042017_P002
Zm00001d042600_P001
Zm00001d044836_P001
Zm00001d047985_P002
Zm00001d048134_P001
Zm00001d052256_P001
Zm00001d052595_P001
Zm00001d053726_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G17680.1 Zm00001d010236_P001 AT1G22840.1 21798944
AT4G17680.1 Zm00001d038218_P001 AT1G22840.1 21798944
AT4G17680.1 Zm00001d042600_P001 AT1G22840.1 21798944
AT4G17680.1 Zm00001d028055_P001 AT1G49850.1 21798944
AT4G17680.1 Zm00001d030843_P001 AT1G49850.1 21798944
AT4G17680.1 Zm00001d048134_P001 AT1G49850.1 21798944
AT4G17680.1 Zm00001d042017_P002 AT1G76760.1 21798944
AT4G17680.1 Zm00001d047985_P002 AT2G32840.1 21798944
AT4G17680.1 Zm00001d037512_P001 AT3G10970.1 21798944
AT4G17680.1 Zm00001d020971_P002 AT3G12930.1 21798944
AT4G17680.1 Zm00001d018045_P001 AT3G47620.1 21798944
AT4G17680.1 Zm00001d037221_P001 AT3G47620.1 21798944
AT4G17680.1 Zm00001d044836_P001 AT3G47620.1 21798944
AT4G17680.1 Zm00001d052256_P001 AT3G47620.1 21798944
AT4G17680.1 Zm00001d001952_P001 AT3G51180.1 21798944
AT4G17680.1 Zm00001d026536_P002 AT3G51180.1 21798944
AT4G17680.1 Zm00001d018501_P001 AT3G54826.1 21798944
AT4G17680.1 Zm00001d008345_P003 AT4G02150.1 21798944
AT4G17680.1 Zm00001d040274_P001 AT4G02150.1 21798944
AT4G17680.1 Zm00001d053726_P001 AT4G32190.1 21798944
AT4G17680.1 Zm00001d003927_P001 AT5G14070.1 21798944
AT4G17680.1 Zm00001d016593_P001 AT5G14070.1 21798944
AT4G17680.1 Zm00001d004894_P001 AT5G38420.1 21798944
AT4G17680.1 Zm00001d052595_P001 AT5G38420.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES05709 Sorghum nucleus 77.34 77.34
Zm00001d017649_P001 Maize plastid 71.1 75.83
Os02t0687500-01 Rice cytosol, nucleus, plastid 63.74 70.75
TraesCS6D01G243000.1 Wheat cytosol 62.61 66.17
TraesCS6B01G289500.1 Wheat nucleus 62.61 65.38
TraesCS6A01G262200.1 Wheat nucleus 62.04 64.41
HORVU6Hr1G066640.4 Barley nucleus 61.76 63.56
GSMUA_Achr2P12040_001 Banana plastid 33.71 44.24
GSMUA_Achr1P00560_001 Banana nucleus 35.98 43.94
GSMUA_Achr2P18250_001 Banana nucleus 40.23 43.03
GSMUA_Achr4P21690_001 Banana nucleus 38.81 42.28
Zm00001d047069_P001 Maize cytosol 38.81 41.27
GSMUA_Achr4P30100_001 Banana plastid 35.41 40.98
Zm00001d029988_P001 Maize cytosol, mitochondrion, nucleus 37.96 39.88
VIT_02s0012g00290.t01 Wine grape cytosol, nucleus, plastid 37.39 39.17
GSMUA_Achr8P14860_001 Banana nucleus 37.39 39.17
KRH77271 Soybean plastid 35.13 38.51
Solyc06g061020.2.1 Tomato nucleus 35.69 38.07
Solyc08g007120.2.1 Tomato nucleus 34.56 36.86
Solyc08g077460.2.1 Tomato nucleus 36.26 36.78
KRH28216 Soybean nucleus 34.28 36.78
PGSC0003DMT400004642 Potato nucleus 35.98 36.71
PGSC0003DMT400068387 Potato nucleus 35.41 36.55
Bra024967.1-P Field mustard plastid 25.21 36.03
Zm00001d010503_P001 Maize cytosol, mitochondrion 13.03 35.66
AT1G32740.1 Thale cress nucleus 31.44 35.58
KRH04275 Soybean nucleus 35.41 35.01
CDX77733 Canola nucleus 29.46 34.67
CDY33511 Canola nucleus 29.75 34.65
Bra017511.1-P Field mustard nucleus 29.46 34.44
CDY43447 Canola nucleus 29.46 34.44
KRH57556 Soybean nucleus 33.71 34.0
AT5G47050.1 Thale cress nucleus 28.61 33.67
CDY09609 Canola cytosol 23.51 33.6
PGSC0003DMT400052841 Potato nucleus 32.29 32.66
CDY03162 Canola cytosol 29.75 32.61
AT4G17680.1 Thale cress nucleus 28.61 32.17
CDY37172 Canola cytosol 27.48 32.12
CDX90458 Canola cytosol 27.48 31.91
CDY51856 Canola cytosol 27.2 31.68
Zm00001d004743_P001 Maize plastid 14.73 31.52
Zm00001d026161_P001 Maize cytosol 12.18 30.5
Bra022093.1-P Field mustard nucleus 18.41 29.55
Zm00001d025319_P001 Maize cytosol 25.21 28.8
Zm00001d003850_P001 Maize extracellular 26.06 27.54
Zm00001d016648_P001 Maize cytosol 24.08 27.42
Zm00001d003852_P001 Maize cytosol, nucleus, plastid 25.5 27.27
Bra012650.1-P Field mustard nucleus 26.35 26.65
Zm00001d025310_P001 Maize cytosol 24.08 26.48
Zm00001d052640_P001 Maize cytosol, extracellular, nucleus 21.53 25.68
Zm00001d052639_P001 Maize extracellular 23.23 24.26
Zm00001d013571_P001 Maize cytosol, nucleus, plastid 21.81 23.33
Zm00001d047856_P001 Maize nucleus, plastid 20.11 21.58
Zm00001d033419_P001 Maize plastid 17.0 21.43
Zm00001d028532_P001 Maize nucleus, plastid 20.4 21.36
Zm00001d015130_P001 Maize cytosol, nucleus, plastid 21.25 21.07
Zm00001d003613_P002 Maize nucleus 16.71 13.59
Protein Annotations
EnsemblPlants:Zm00001d051484_P001EnsemblPlants:Zm00001d051484_T001EnsemblPlantsGene:Zm00001d051484Gene3D:3.30.40.10InterPro:E3ligase_BOI_likeInterPro:IPR001841
InterPro:IPR013083InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDncoils:CoilPANTHER:PTHR42647PANTHER:PTHR42647:SF5
PFAM:PF13920PFscan:PS50089PIRSF:PIRSF036836ProteinID:AQK54321.1SEG:segUniParc:UPI0008436CA4
UniProt:A0A1D6Q758MapMan:35.2::::
Description
Putative RING zinc finger domain superfamily protein%3B S-ribonuclease binding protein SBP1
Coordinates
chr4:+:160245754..160247270
Molecular Weight (calculated)
37849.6 Da
IEP (calculated)
8.497
GRAVY (calculated)
-0.433
Length
353 amino acids
Sequence
(BLAST)
001: MAVQAQYPSD LLFHARCASS HSATRRVPSL LLPLPTPRER GEPERRKEMD MPTPPQLAGV SPAAVYFSGG GASGKSRRKR PREECVSLFT VQPQQSTAFA
101: SVALFQTQNM VSSSPSPAAT ALVSTGLRLA FDEQQQQQES KQTDAFGYPS SPSQSGSVSD ELAAQVKRHD EEIDRFVREQ GEQLRRAVAD RLRRHSRAIL
201: AKAERSAAAR LREKASEAER EARRGAELEE RLARLRGEAG AWQAKALSEQ AAAATLHAQL QQQAAARASA EEQLAAGGGD AGAAQSSSSA YVDPRRSDRA
301: CLGCRLRPAS VVLIPCRHLP LCGECFAAGD ADAAMACPVC LCVRTGSVEA ILC
Best Arabidopsis Sequence Match ( AT1G32740.1 )
(BLAST)
001: MAVQAQHHSS NLLFLNKRNG KEKEHSNFTL QSQAAGDFLD QTNMLFNNGS SNQRKRRRET NNHQLLPMQS HQFPQVIDLS LLHNYNHPPS NMVHTGLRLF
101: SGEDQAQKIS HLSEDVFAAH INRQSEELDE FLHAQAEELR RTLAEKRKMH YKALLGAVEE SLVRKLREKE VEIERATRRH NELVARDSQL RAEVQVWQER
201: AKAHEDAAAS LQSQLQQAVN QCAGGCVSAQ DSRAAEEGLL CTTISGVDDA ESVYVDPERV KRPNCKACRE REATVVVLPC RHLSICPGCD RTALACPLCL
301: TLRNSSVEAI FC
Arabidopsis Description
SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8LCK5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.