Factsheet for Zm00001d042600_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GRMZM5G867512_P01
Zm00001d007842_P002
Zm00001d013559_P001
Zm00001d018742_P001
Zm00001d033404_P002
Zm00001d033859_P002
Zm00001d033861_P001
Zm00001d034212_P001
Zm00001d048085_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22840.1	Zm00001d007842_P002	AT4G08150.1	21798944
AT1G22840.1	Zm00001d013559_P001	AT4G08150.1	21798944
AT1G22840.1	Zm00001d018742_P001	AT4G08150.1	21798944
AT1G22840.1	Zm00001d033404_P002	AT4G08150.1	21798944
AT1G22840.1	Zm00001d033859_P002	AT4G08150.1	21798944
AT1G22840.1	Zm00001d033861_P001	AT4G08150.1	21798944
AT1G22840.1	Zm00001d034212_P001	AT4G08150.1	21798944
AT1G22840.1	GRMZM5G867512_P01	ATMG00960.1	18644794
AT4G10040.1	Zm00001d048085_P002	AT3G29575.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03996	Sorghum	cytosol	97.32	97.32
Os05t0420600-01	Rice	mitochondrion	95.54	95.54
VIT_18s0001g05810.t01	Wine grape	cytosol	93.75	93.75
TraesCS3B01G438700.1	Wheat	cytosol	92.86	92.86
Solyc01g103220.2.1	Tomato	extracellular, plastid, unclear	92.86	92.86
TraesCS3D01G400400.1	Wheat	cytosol	92.86	92.86
Zm00001d010236_P001	Maize	plastid	92.86	92.86
TraesCS3A01G405000.1	Wheat	cytosol	91.96	91.96
PGSC0003DMT400063997	Potato	cytosol	91.96	91.96
CDX90744	Canola	cytosol	91.07	91.07
Bra000699.1-P	Field mustard	cytosol	91.07	91.07
PGSC0003DMT400002609	Potato	cytosol	91.07	91.07
Zm00001d038218_P001	Maize	mitochondrion	91.07	91.07
CDY05083	Canola	cytosol	90.18	90.18
Solyc11g042420.1.1	Tomato	cytosol	90.18	90.18
Bra037901.1-P	Field mustard	cytosol	80.36	90.0
AT4G10040.1	Thale cress	cytosol	89.29	89.29
CDY25756	Canola	cytosol	89.29	89.29
CDY12506	Canola	cytosol	89.29	89.29
Bra012346.1-P	Field mustard	cytosol	89.29	89.29
CDY21393	Canola	cytosol	88.39	88.39
CDY04780	Canola	cytosol	88.39	88.39
Bra024541.1-P	Field mustard	cytosol	88.39	88.39
CDX99521	Canola	cytosol	80.36	84.91
AT1G22840.1	Thale cress	cytosol	85.71	84.21
Zm00001d026709_P001	Maize	cytosol	78.57	78.57
HORVU3Hr1G090840.1	Barley	mitochondrion, plastid	92.86	70.27
GSMUA_Achr5P16900_001	Banana	cytosol	49.11	50.46
KRH16722	Soybean	mitochondrion	25.89	32.22

Protein Annotations

Gene3D:1.10.760.10	EntrezGene:100277932	MapMan:2.4.4.1	UniProt:B4FYS2	EMBL:BT042260	InterPro:Cyt_c-like_dom
InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c_1A/1B	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0020037	GO:GO:0022900
GO:GO:0046872	GO:GO:0055114	GO:GO:0070469	InterPro:IPR009056	InterPro:IPR036909	ProteinID:ONM35841.1
PFAM:PF00034	PRINTS:PR00604	PFscan:PS51007	PANTHER:PTHR11961	PANTHER:PTHR11961:SF9	SUPFAM:SSF46626
UniParc:UPI00017B810A	EnsemblPlantsGene:Zm00001d042600	EnsemblPlants:Zm00001d042600_P001	EnsemblPlants:Zm00001d042600_T001	:	:

Description

Cytochrome c-2

Coordinates

chr3:+:173133842..173138661

Molecular Weight (calculated)

12211.6 Da

IEP (calculated)

9.810

GRAVY (calculated)

-0.580

Length

112 amino acids

Sequence
(BLAST)

001: MASFSEAPPG NPTAGEKIFK TKCAQCHTVD KGAGHKQGPN LNGLFGRQSG TTPGYSYSSA NKNMAVIWEE NTLYDYLLNP KKYIPGTKMV FPGLKKPQER
101: ADLIAYLKNA TV

Best Arabidopsis Sequence Match ( AT4G10040.1 )
(BLAST)

001: MASFDEAPPG NPKAGEKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKSMAVNWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKEG TA

Arabidopsis Description

CYTC-2CYTC-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UZN3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.