Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G400400.1 | Wheat | cytosol | 98.21 | 98.21 |
| TraesCS3B01G438700.1 | Wheat | cytosol | 98.21 | 98.21 |
| EES03996 | Sorghum | cytosol | 94.64 | 94.64 |
| VIT_18s0001g05810.t01 | Wine grape | cytosol | 92.86 | 92.86 |
| Zm00001d042600_P001 | Maize | cytosol | 91.96 | 91.96 |
| Solyc01g103220.2.1 | Tomato | extracellular, plastid, unclear | 91.07 | 91.07 |
| CDX90744 | Canola | cytosol | 90.18 | 90.18 |
| PGSC0003DMT400063997 | Potato | cytosol | 90.18 | 90.18 |
| PGSC0003DMT400002609 | Potato | cytosol | 90.18 | 90.18 |
| Bra000699.1-P | Field mustard | cytosol | 90.18 | 90.18 |
| AT4G10040.1 | Thale cress | cytosol | 90.18 | 90.18 |
| Bra037901.1-P | Field mustard | cytosol | 80.36 | 90.0 |
| CDY25756 | Canola | cytosol | 89.29 | 89.29 |
| CDY12506 | Canola | cytosol | 89.29 | 89.29 |
| Bra012346.1-P | Field mustard | cytosol | 89.29 | 89.29 |
| CDY05083 | Canola | cytosol | 89.29 | 89.29 |
| Solyc11g042420.1.1 | Tomato | cytosol | 89.29 | 89.29 |
| Bra024541.1-P | Field mustard | cytosol | 88.39 | 88.39 |
| CDY21393 | Canola | cytosol | 88.39 | 88.39 |
| CDY04780 | Canola | cytosol | 88.39 | 88.39 |
| TraesCS1A01G263300.1 | Wheat | extracellular, unclear | 87.5 | 86.73 |
| CDX99521 | Canola | cytosol | 80.36 | 84.91 |
| AT1G22840.1 | Thale cress | cytosol | 85.71 | 84.21 |
| HORVU3Hr1G090840.1 | Barley | mitochondrion, plastid | 96.43 | 72.97 |
| Os04t0693050-01 | Rice | plastid | 59.82 | 70.53 |
| GSMUA_Achr5P16900_001 | Banana | cytosol | 45.54 | 46.79 |
| KRH16722 | Soybean | mitochondrion | 25.89 | 32.22 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G405000.1 | EnsemblPlantsGene:TraesCS3A01G405000 | Gene3D:1.10.760.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0009055 | GO:GO:0020037 | InterPro:Cyt_c-like_dom | InterPro:Cyt_c-like_dom_sf | InterPro:Cyt_c_1A/1B | InterPro:IPR009056 |
| InterPro:IPR036909 | PANTHER:PTHR11961 | PANTHER:PTHR11961:SF9 | PFAM:PF00034 | PFscan:PS51007 | PRINTS:PR00604 |
| SEG:seg | SUPFAM:SSF46626 | MapMan:2.4.4.1 | : | : | : |
Description
No Description!
Coordinates
chr3A:+:649808649..649811308
Molecular Weight (calculated)
12117.6 Da
IEP (calculated)
10.068
GRAVY (calculated)
-0.532
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFSEAPPG NPAAGEKIFK TKCAQCHTVD KGAGHKQGPN LNGLFGRKSG TTTGYSYSTA NKSMAVVWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQER
101: ADLIAYLKSA TA
101: ADLIAYLKSA TA
001: MASFDEAPPG NPKAGEKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKSMAVNWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKEG TA
101: ADLIAYLKEG TA
Arabidopsis Description
CYTC-2CYTC-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UZN3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.