Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G451000.1 | Wheat | mitochondrion | 98.31 | 98.31 |
| TraesCS2A01G239800.1 | Wheat | mitochondrion | 96.95 | 96.95 |
| HORVU3Hr1G055030.1 | Barley | mitochondrion, peroxisome, plastid, vacuole | 28.14 | 95.4 |
| TraesCS6D01G200900.1 | Wheat | plastid | 91.53 | 94.41 |
| HORVU2Hr1G070240.1 | Barley | golgi, mitochondrion, vacuole | 13.56 | 90.91 |
| TraesCS6D01G375100.1 | Wheat | mitochondrion | 93.9 | 89.64 |
| ATMG00960.1 | Thale cress | cytosol, peroxisome, plasma membrane | 60.68 | 88.18 |
| AT2G07768.1 | Thale cress | mitochondrion | 38.98 | 74.68 |
| CDY69820 | Canola | mitochondrion | 26.78 | 64.75 |
| CDY17575 | Canola | mitochondrion | 23.73 | 55.56 |
| CDY17565 | Canola | mitochondrion | 27.46 | 51.27 |
| TraesCS7D01G238600.1 | Wheat | plasma membrane | 98.31 | 50.52 |
| BAC19893 | Rice | endoplasmic reticulum | 96.95 | 48.15 |
| GRMZM5G867512_P01 | Maize | mitochondrion | 92.88 | 44.19 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 52.54 | 42.47 |
| CDY45536 | Canola | mitochondrion | 29.83 | 42.31 |
| HORVU2Hr1G070250.1 | Barley | extracellular, vacuole | 8.14 | 28.57 |
Protein Annotations
| MapMan:2.4.4.2.3.2 | InterPro:Cyt_c_assembly | InterPro:Cyt_c_biogenesis | InterPro:Cyt_c_biogenesis_plant | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015232 |
| GO:GO:0015886 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0017004 | GO:GO:0020037 | PFAM:PF01578 |
| PRINTS:PR01410 | PRINTS:PR01412 | PANTHER:PTHR43653 | PANTHER:PTHR43653:SF1 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS7D01G533300 |
| EnsemblPlants:TraesCS7D01G533300.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:626682880..626683767
Molecular Weight (calculated)
33105.8 Da
IEP (calculated)
11.517
GRAVY (calculated)
0.052
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFGLCRSKM MNGIVALESP PMRKDAAEKN GTLLRSAGCV GSHIRSSLFT RSFKHFVGGA PALLLRSNRS LLMLLRRRFF AFSSLWTGAL MDTGREQAKR
101: VVRNGKKDTT TSPLCWTAGA NTVVSDQDQE PIRIWILTCR LFLTVGISPG SCWAHHELGR GGWWFRDPVE NASFMPRVLA TARIHSVILP LLHSWTSLLN
201: ILTLPCCVLG TFSIRSGLLA PVHSSATDDT RGRFLWRFFL LITGISMTLF YQMKQEASVR RTYKKEMVVA RSTLVHLHHS ARAQPRPVML CYGRI
101: VVRNGKKDTT TSPLCWTAGA NTVVSDQDQE PIRIWILTCR LFLTVGISPG SCWAHHELGR GGWWFRDPVE NASFMPRVLA TARIHSVILP LLHSWTSLLN
201: ILTLPCCVLG TFSIRSGLLA PVHSSATDDT RGRFLWRFFL LITGISMTLF YQMKQEASVR RTYKKEMVVA RSTLVHLHHS ARAQPRPVML CYGRI
001: VDTGREQAKR VVRNGKKETT TSPLCWTAGA NTVVSDQDQE PIRIWILTCW WFLTVGILPG SWWAYHELGR GGWWFRDPVE NASFMPRVLA TARIHSVILP
101: LLHSWTSFLN IVTFPCCVSG TFSIRSGLLA PVHSFATDDT RGIFLWWFFL LMTGISMILF YQMKQQASVR RTYKKEMVVA RSTLVHLRHS ARAQPRPVML
201: WKN
101: LLHSWTSFLN IVTFPCCVSG TFSIRSGLLA PVHSFATDDT RGIFLWWFFL LMTGISMILF YQMKQQASVR RTYKKEMVVA RSTLVHLRHS ARAQPRPVML
201: WKN
Arabidopsis Description
CCB203Cytochrome C assembly protein [Source:TAIR;Acc:ATMG00960]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.