Factsheet for TraesCS3B01G121800.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G451000.1
TraesCS2A01G239800.1
TraesCS6D01G200900.1
TraesCS6D01G375100.1
TraesCS7D01G238600.1
TraesCS7D01G533300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00180.1	TraesCS1B01G451000.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS2A01G239800.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS6D01G200900.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS6D01G375100.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS7D01G238600.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS7D01G533300.1	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G067010.1	Barley	extracellular, plasma membrane, vacuole	98.55	98.55
TraesCS1B01G352800.1	Wheat	extracellular	97.83	98.18
TraesCS1B01G475500.1	Wheat	extracellular, plasma membrane, vacuole	97.83	98.18
TraesCS1B01G188800.1	Wheat	extracellular, plasma membrane, vacuole	97.46	97.82
TraesCS1D01G128300.1	Wheat	extracellular, plasma membrane, vacuole	97.46	97.82
TraesCS6B01G357400.1	Wheat	extracellular, plasma membrane, vacuole	94.57	95.6
TraesCS6B01G232500.1	Wheat	extracellular	67.75	93.97
TraesCS6B01G131800.1	Wheat	endoplasmic reticulum, extracellular	70.65	92.86
TraesCS7B01G429400.1	Wheat	extracellular	69.93	92.34
TraesCS6B01G131500.1	Wheat	endoplasmic reticulum, extracellular	71.38	89.55
TraesCS1B01G065500.1	Wheat	extracellular	67.03	89.37
TraesCS3B01G121300.1	Wheat	endoplasmic reticulum	71.01	89.09
TraesCS7B01G047700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	81.88	85.61
VIT_03s0063g02270.t01	Wine grape	extracellular	15.58	62.32
BAC19894	Rice	endoplasmic reticulum, plasma membrane	89.86	56.88
Solyc11g039360.1.1	Tomato	vacuole	60.14	48.26
PGSC0003DMT400087800	Potato	cytosol, mitochondrion, plastid, vacuole	69.57	47.76
ATMG00180.1	Thale cress	plasma membrane	73.91	45.13
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	40.22	33.33
CDY45515	Canola	mitochondrion	24.64	33.33
CDY17587	Canola	mitochondrion	24.64	33.33
AT2G07815.1	Thale cress	mitochondrion	24.64	24.37

Protein Annotations

EnsemblPlants:TraesCS3B01G121800.1

EnsemblPlantsGene:TraesCS3B01G121800

PANTHER:PTHR36010

SEG:seg

TMHMM:TMhelix

MapMan:35.1

Description

No Description!

Coordinates

chr3B:+:92262854..92263684

Molecular Weight (calculated)

30448.7 Da

IEP (calculated)

10.558

GRAVY (calculated)

0.144

Length

276 amino acids

Sequence
(BLAST)

001: MVQLQNFFFF ITSMVVPRGT AAPVLLKWFV SRDVPTGASS SNGTIIPIPI PLFPFLVYLH LRKFIRSMDR AKSGVLVKAS RPILLPDKME RSSSARNALF
101: RFVPVLHFLI IESMGDLSYL ESFCGLLCLQ FFRTLFSLPR DRSAKRERAL RSKGQTLRPK GNEQQNDKMR CPGHPHIERR VEGFGPVAFP APPPSSSGAC
201: LGGVPPESGL EALALPTSRL LIAVGHDYYK KVKMNLSISH AGVCIFMLGV LLSCDPMAYV RPVAHASYSI CSGRAA

Best Arabidopsis Sequence Match ( ATMG00180.1 )
(BLAST)

001: MVQLHNFFFF IIFMVVPCGT AAPVLLKWFV SRDVPTGAPF SNGTIIPIPI SSFPLLVYLH SRKIIRSMDG AKSGVLVRAS RPILLPDIIG RSSSETRARK
101: ALFFFVPVLH FRLLESKGDF SYLESFCGVL CLLFFRTFLF LARDRSAKRE RARRRKGQTL RPNGNEQRRN DKMRCSGHPH LDLERRVEGF GPLAFPVPPE
201: LGGACVGGVP PEIGLEALAL PRSRQLMAMA VGHDYYQKVP MKMNISHGGV CICMLGVLLS NTKKIQFTQR LPLGYELHMG KERCCLRGLD HLHGPTFHSI
301: CGNLMIYKPS LTNDRLMFEH DESLHADLLL INFPASYKNG KLEHFLHWWM KNRKHNNFWL TMFPEKRYFR ERTSTAEVAI HTNLFTDLYA SIGTGSSRTG
401: GWYTTIMKLP FIFFIRIGFM LASLGGSPSL LRQLQKDKLR WNRESSVEFI IA

Arabidopsis Description

CCB452CcmFC [Source:UniProtKB/TrEMBL;Acc:G1C2X7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.