Factsheet for GSMUA_AchrUn_randomP03330_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

plastid 1
mitochondrion 2
extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00180.1	GSMUA_AchrUn_...	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0063g02270.t01	Wine grape	extracellular	12.91	62.32
BAC19894	Rice	endoplasmic reticulum, plasma membrane	79.28	60.55
ATMG00180.1	Thale cress	plasma membrane	74.47	54.87
TraesCS7B01G047700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	33.33	42.05
TraesCS1B01G188800.1	Wheat	extracellular, plasma membrane, vacuole	34.23	41.45
TraesCS2A01G509000.1	Wheat	endoplasmic reticulum, extracellular	33.93	41.24
TraesCS1B01G475500.1	Wheat	extracellular, plasma membrane, vacuole	33.63	40.73
TraesCS5D01G003300.1	Wheat	extracellular, plasma membrane, vacuole	33.63	40.73
TraesCS6B01G357400.1	Wheat	extracellular, plasma membrane, vacuole	33.33	40.66
HORVU7Hr1G067010.1	Barley	extracellular, plasma membrane, vacuole	33.63	40.58
TraesCS2A01G330700.1	Wheat	extracellular	33.33	40.51
HORVU6Hr1G037070.1	Barley	extracellular, plasma membrane, vacuole	33.33	40.36
TraesCS1B01G352800.1	Wheat	extracellular	33.33	40.36
TraesCS1D01G128300.1	Wheat	extracellular, plasma membrane, vacuole	33.33	40.36
TraesCS3D01G197300.1	Wheat	extracellular	33.33	40.36
TraesCS3B01G121800.1	Wheat	extracellular, plasma membrane, vacuole	33.33	40.22
TraesCS3A01G218900.3	Wheat	extracellular	32.43	39.56
TraesCS4D01G146500.1	Wheat	endoplasmic reticulum	32.43	39.42
TraesCS4D01G161300.1	Wheat	plasma membrane	32.43	39.13
TraesCS3D01G103300.1	Wheat	endoplasmic reticulum, vacuole	34.23	38.78
TraesCS1A01G145400.1	Wheat	plasma membrane, vacuole	30.63	37.36
TraesCS6B01G232500.1	Wheat	extracellular	20.42	34.17
TraesCSU01G050200.1	Wheat	endoplasmic reticulum, extracellular	21.32	33.97
TraesCS7B01G429400.1	Wheat	extracellular	21.32	33.97
HORVU1Hr1G025070.1	Barley	extracellular	22.22	33.79
TraesCS6B01G131500.1	Wheat	endoplasmic reticulum, extracellular	22.22	33.64
TraesCS6D01G324000.1	Wheat	endoplasmic reticulum, extracellular	21.02	33.49
TraesCS1B01G065500.1	Wheat	extracellular	20.72	33.33
TraesCS6B01G131800.1	Wheat	endoplasmic reticulum, extracellular	21.02	33.33
TraesCS3B01G121300.1	Wheat	endoplasmic reticulum	21.62	32.73
HORVU0Hr1G010690.1	Barley	endoplasmic reticulum, extracellular, vacuole	20.42	31.19
CDY45515	Canola	mitochondrion	18.92	30.88
CDY17587	Canola	mitochondrion	18.92	30.88
AT2G07815.1	Thale cress	mitochondrion	18.92	22.58
PGSC0003DMT400087800	Potato	cytosol, mitochondrion, plastid, vacuole	27.03	22.39
Solyc11g039360.1.1	Tomato	vacuole	22.82	22.09

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP03330_001	EnsemblPlants:GSMUA_AchrUn_randomT03330_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG03330_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:CcmF_C	PANTHER:PTHR36010	PFAM:PF16327	SEG:seg	TMHMM:TMhelix	UniParc:UPI00029546B0
UniProt:M0U5Z5	MapMan:35.1	:	:	:	:

Description

Putative cytochrome c biogenesis ccmF-like mitochondrial protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG03330_001]

Coordinates

chrchrUn_random:-:16625781..16628547

Molecular Weight (calculated)

37851.4 Da

IEP (calculated)

10.351

GRAVY (calculated)

0.057

Length

333 amino acids

Sequence
(BLAST)

001: MVQLQNFFFF ITSMVVPRGT AAPVLFQWFV SRDVLTGAPS SNGTIIPIPI SSFLFMVYLH SRKFIRSMDR AQSGVLTLFV DLPSVLSIRY LARLEALALP
101: TSRLLMTVGH DYYQKVQMNL PISHGGVCIF LLGVFLSSTN TNKIQFTQLL PLGPELHMGK ERCSLRGLDH LHGPTSHSIC GNLIIYKPSP TSDRLMLEHD
201: ESLRADLLPR NFHASYDHGK LEHFLHRWMK NHSHQNLWLT MFPEKRYFLS IRKTTSTTEV AIHTNLFTDL YAPIGTGSGR TGGWYTTIIQ LPFLFHIRIG
301: FLLASSGGSL RLLRQLKKEK LHWNRDSGPF IIA

Best Arabidopsis Sequence Match ( ATMG00180.1 )
(BLAST)

001: MVQLHNFFFF IIFMVVPCGT AAPVLLKWFV SRDVPTGAPF SNGTIIPIPI SSFPLLVYLH SRKIIRSMDG AKSGVLVRAS RPILLPDIIG RSSSETRARK
101: ALFFFVPVLH FRLLESKGDF SYLESFCGVL CLLFFRTFLF LARDRSAKRE RARRRKGQTL RPNGNEQRRN DKMRCSGHPH LDLERRVEGF GPLAFPVPPE
201: LGGACVGGVP PEIGLEALAL PRSRQLMAMA VGHDYYQKVP MKMNISHGGV CICMLGVLLS NTKKIQFTQR LPLGYELHMG KERCCLRGLD HLHGPTFHSI
301: CGNLMIYKPS LTNDRLMFEH DESLHADLLL INFPASYKNG KLEHFLHWWM KNRKHNNFWL TMFPEKRYFR ERTSTAEVAI HTNLFTDLYA SIGTGSSRTG
401: GWYTTIMKLP FIFFIRIGFM LASLGGSPSL LRQLQKDKLR WNRESSVEFI IA

Arabidopsis Description

CCB452CcmFC [Source:UniProtKB/TrEMBL;Acc:G1C2X7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.