Factsheet for TraesCS7B01G047700.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G451000.1
TraesCS2A01G239800.1
TraesCS6D01G200900.1
TraesCS6D01G375100.1
TraesCS7D01G238600.1
TraesCS7D01G533300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00180.1	TraesCS1B01G451000.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS2A01G239800.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS6D01G200900.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS6D01G375100.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS7D01G238600.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS7D01G533300.1	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G232500.1	Wheat	extracellular	69.32	91.96
TraesCS3B01G121300.1	Wheat	endoplasmic reticulum	73.86	88.64
TraesCS6B01G131500.1	Wheat	endoplasmic reticulum, extracellular	73.48	88.18
TraesCS6B01G131800.1	Wheat	endoplasmic reticulum, extracellular	69.32	87.14
TraesCS1B01G065500.1	Wheat	extracellular	68.18	86.96
TraesCS7B01G429400.1	Wheat	extracellular	68.56	86.6
TraesCS1B01G188800.1	Wheat	extracellular, plasma membrane, vacuole	85.61	82.18
TraesCS3B01G121800.1	Wheat	extracellular, plasma membrane, vacuole	85.61	81.88
TraesCS1B01G475500.1	Wheat	extracellular, plasma membrane, vacuole	85.23	81.82
TraesCS1B01G352800.1	Wheat	extracellular	84.85	81.45
TraesCS4D01G146500.1	Wheat	endoplasmic reticulum	83.33	80.29
TraesCS6B01G357400.1	Wheat	extracellular, plasma membrane, vacuole	82.2	79.49
TraesCS1A01G145400.1	Wheat	plasma membrane, vacuole	78.03	75.46
VIT_03s0063g02270.t01	Wine grape	extracellular	15.15	57.97
BAC19894	Rice	endoplasmic reticulum, plasma membrane	87.12	52.75
Solyc11g039360.1.1	Tomato	vacuole	57.58	44.19
PGSC0003DMT400087800	Potato	cytosol, mitochondrion, plastid, vacuole	65.91	43.28
ATMG00180.1	Thale cress	plasma membrane	72.35	42.26
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	42.05	33.33
CDY45515	Canola	mitochondrion	23.86	30.88
CDY17587	Canola	mitochondrion	23.86	30.88
AT2G07815.1	Thale cress	mitochondrion	23.86	22.58

Protein Annotations

EnsemblPlants:TraesCS7B01G047700.1	EnsemblPlantsGene:TraesCS7B01G047700	PANTHER:PTHR36010	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr7B:-:47201946..47203747

Molecular Weight (calculated)

29772.0 Da

IEP (calculated)

10.870

GRAVY (calculated)

0.123

Length

264 amino acids

Sequence
(BLAST)

001: MVQLQNFLFF ITSMVVPRGT AAPVLLKWFV GRDVPTGASS SNGTIIPIPI PLFPFLVDLH LRKFIRSMDR AKRGVLVKAS RPILLPDKME RSSSARNALF
101: HFVPVLHFLI IESMGDLSYL ESFCGLLCLQ FFRTLFSLPR DRSAKHEWAL QSNVQTLRPK GNEQQNDKMR CPGHPHIEIR VEGFGPVAFP APPPRRVVLV
201: WRVCHQKSGL EALALPMSRL LMAVGHDYYK KVKMNLSISH GGVCIFMLGV LLSSTNTNKI HFTQ

Best Arabidopsis Sequence Match ( ATMG00180.1 )
(BLAST)

001: MVQLHNFFFF IIFMVVPCGT AAPVLLKWFV SRDVPTGAPF SNGTIIPIPI SSFPLLVYLH SRKIIRSMDG AKSGVLVRAS RPILLPDIIG RSSSETRARK
101: ALFFFVPVLH FRLLESKGDF SYLESFCGVL CLLFFRTFLF LARDRSAKRE RARRRKGQTL RPNGNEQRRN DKMRCSGHPH LDLERRVEGF GPLAFPVPPE
201: LGGACVGGVP PEIGLEALAL PRSRQLMAMA VGHDYYQKVP MKMNISHGGV CICMLGVLLS NTKKIQFTQR LPLGYELHMG KERCCLRGLD HLHGPTFHSI
301: CGNLMIYKPS LTNDRLMFEH DESLHADLLL INFPASYKNG KLEHFLHWWM KNRKHNNFWL TMFPEKRYFR ERTSTAEVAI HTNLFTDLYA SIGTGSSRTG
401: GWYTTIMKLP FIFFIRIGFM LASLGGSPSL LRQLQKDKLR WNRESSVEFI IA

Arabidopsis Description

CCB452CcmFC [Source:UniProtKB/TrEMBL;Acc:G1C2X7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.