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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:
  • plastid 2
  • extracellular 4
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 5
  • golgi 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:secretory
MultiLoc:mitochondrion
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:endoplasmic reticulum
PPI

Inferred distinct locusB in Crop

locusBlocations
BAC19893

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
ATMG00180.1 BAC19893 ATMG00960.1 18644794
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6B01G232500.1 Wheat extracellular 41.97 91.96
TraesCSU01G050200.1 Wheat endoplasmic reticulum, extracellular 43.58 90.91
TraesCS1B01G188800.1 Wheat extracellular, plasma membrane, vacuole 57.34 90.91
TraesCS6B01G131800.1 Wheat endoplasmic reticulum, extracellular 43.35 90.0
TraesCS6D01G324000.1 Wheat endoplasmic reticulum, extracellular 43.12 89.95
TraesCS7B01G429400.1 Wheat extracellular 43.12 89.95
TraesCS3B01G121800.1 Wheat extracellular, plasma membrane, vacuole 56.88 89.86
HORVU7Hr1G067010.1 Barley extracellular, plasma membrane, vacuole 56.88 89.86
TraesCS1D01G128300.1 Wheat extracellular, plasma membrane, vacuole 56.65 89.82
TraesCS1B01G475500.1 Wheat extracellular, plasma membrane, vacuole 56.65 89.82
TraesCS1B01G352800.1 Wheat extracellular 56.65 89.82
TraesCS2A01G330700.1 Wheat extracellular 56.42 89.78
TraesCS2A01G509000.1 Wheat endoplasmic reticulum, extracellular 56.19 89.42
TraesCS3D01G197300.1 Wheat extracellular 56.19 89.09
TraesCS5D01G003300.1 Wheat extracellular, plasma membrane, vacuole 55.96 88.73
HORVU1Hr1G025070.1 Barley extracellular 44.5 88.58
TraesCS4D01G146500.1 Wheat endoplasmic reticulum 55.28 87.96
TraesCS6B01G357400.1 Wheat extracellular, plasma membrane, vacuole 54.82 87.55
TraesCS7B01G047700.1 Wheat endoplasmic reticulum, extracellular, vacuole 52.75 87.12
TraesCS1B01G065500.1 Wheat extracellular 41.28 86.96
TraesCS6B01G131500.1 Wheat endoplasmic reticulum, extracellular 43.81 86.82
TraesCS3A01G218900.3 Wheat extracellular 54.36 86.81
TraesCS4D01G161300.1 Wheat plasma membrane 54.82 86.59
HORVU6Hr1G037070.1 Barley extracellular, plasma membrane, vacuole 54.59 86.55
TraesCS3B01G121300.1 Wheat endoplasmic reticulum 43.58 86.36
HORVU0Hr1G010690.1 Barley endoplasmic reticulum, extracellular, vacuole 43.12 86.24
TraesCS3D01G103300.1 Wheat endoplasmic reticulum, vacuole 57.34 85.03
TraesCS1A01G145400.1 Wheat plasma membrane, vacuole 50.92 81.32
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, vacuole 60.55 79.28
ATMG00180.1 Thale cress plasma membrane 81.88 78.98
VIT_03s0063g02270.t01 Wine grape extracellular 9.86 62.32
Solyc11g039360.1.1 Tomato vacuole 41.28 52.33
PGSC0003DMT400087800 Potato cytosol, mitochondrion, plastid, vacuole 44.95 48.76
CDY45515 Canola mitochondrion 16.51 35.29
CDY17587 Canola mitochondrion 16.51 35.29
AT2G07815.1 Thale cress mitochondrion 16.51 25.81
Protein Annotations
EnsemblPlants:BAC19894EnsemblPlantsGene:BAC19894EntrezGene:6450169GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005739GO:GO:0016020GO:GO:0016021InterPro:CcmF_CPANTHER:PTHR36010
PFAM:PF16327ProteinID:BAC19894ProteinID:BAC19894.1RefSeq:YP_002000589.1SEG:segTMHMM:TMhelix
UniParc:UPI000009ACC9UniParc:UPI000856DC45UniProt:Q8HCM9MapMan:2.4.4.2.3.1::
Description
ccmFcCytochrome c biogenesis Fc
Coordinates
chrMt:+:330597..332908
Molecular Weight (calculated)
49358.3 Da
IEP (calculated)
10.640
GRAVY (calculated)
-0.149
Length
436 amino acids
Sequence
(BLAST)
001: MVQLQNFFFF ITSMVVPRGT AAPVLLKWFV SRDVPTGASS SNGTIIPIPI SLFPFLVYLH SRKFIRSMDR AKSGVLVKAS RPILLPDKIG RSSSARNALF
101: RFVPVLHFLI IESMGDLSYL ESFCGLLCLQ FFRTLFSLPR DRSAKRERAL RSKGQTLRPK GNEQQNDKMR CPGHPHIERR VEGFGPVAFP APPSSSGACL
201: GPPEIGLEAL ALPTSRLLMA VGHDYYKKVK MNLSISHGGV CIFMLGVLLS NTNKIQFTQR LPLGSELHMG KERCCLRGLD HLHGPTSHSI CGNLMIYKPS
301: PTSERFMFEH DESLRADLLP INFPASYENG KLEDFLHRWM KNHEHKNFRF SMFPERRYFF SIRETRSTTE VAIHTNPFTD LYASIGTGSS RTGGWYTTIM
401: KLPFLFSIRI GFLLASSGGS RSLLRQLQKD KLHWNR
Best Arabidopsis Sequence Match ( ATMG00180.1 )
(BLAST)
001: MVQLHNFFFF IIFMVVPCGT AAPVLLKWFV SRDVPTGAPF SNGTIIPIPI SSFPLLVYLH SRKIIRSMDG AKSGVLVRAS RPILLPDIIG RSSSETRARK
101: ALFFFVPVLH FRLLESKGDF SYLESFCGVL CLLFFRTFLF LARDRSAKRE RARRRKGQTL RPNGNEQRRN DKMRCSGHPH LDLERRVEGF GPLAFPVPPE
201: LGGACVGGVP PEIGLEALAL PRSRQLMAMA VGHDYYQKVP MKMNISHGGV CICMLGVLLS NTKKIQFTQR LPLGYELHMG KERCCLRGLD HLHGPTFHSI
301: CGNLMIYKPS LTNDRLMFEH DESLHADLLL INFPASYKNG KLEHFLHWWM KNRKHNNFWL TMFPEKRYFR ERTSTAEVAI HTNLFTDLYA SIGTGSSRTG
401: GWYTTIMKLP FIFFIRIGFM LASLGGSPSL LRQLQKDKLR WNRESSVEFI IA
Arabidopsis Description
CCB452CcmFC [Source:UniProtKB/TrEMBL;Acc:G1C2X7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.