Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G128300.1 | Wheat | extracellular, plasma membrane, vacuole | 89.8 | 96.0 |
| TraesCS2A01G330700.1 | Wheat | extracellular | 89.46 | 95.99 |
| TraesCS5D01G003300.1 | Wheat | extracellular, plasma membrane, vacuole | 89.12 | 95.27 |
| TraesCS3D01G197300.1 | Wheat | extracellular | 89.12 | 95.27 |
| TraesCS4D01G146500.1 | Wheat | endoplasmic reticulum | 87.42 | 93.8 |
| TraesCS3A01G218900.3 | Wheat | extracellular | 86.73 | 93.41 |
| TraesCS4D01G161300.1 | Wheat | plasma membrane | 86.73 | 92.39 |
| HORVU6Hr1G037070.1 | Barley | extracellular, plasma membrane, vacuole | 86.39 | 92.36 |
| TraesCS6D01G324000.1 | Wheat | endoplasmic reticulum, extracellular | 64.97 | 91.39 |
| VIT_03s0063g02270.t01 | Wine grape | extracellular | 14.63 | 62.32 |
| BAC19894 | Rice | endoplasmic reticulum, plasma membrane | 85.03 | 57.34 |
| Solyc11g039360.1.1 | Tomato | vacuole | 56.8 | 48.55 |
| PGSC0003DMT400087800 | Potato | cytosol, mitochondrion, plastid, vacuole | 64.97 | 47.51 |
| ATMG00180.1 | Thale cress | plasma membrane | 71.09 | 46.24 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, vacuole | 38.78 | 34.23 |
| CDY45515 | Canola | mitochondrion | 22.79 | 32.84 |
| CDY17587 | Canola | mitochondrion | 22.79 | 32.84 |
| AT2G07815.1 | Thale cress | mitochondrion | 22.79 | 24.01 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G103300.1 | EnsemblPlantsGene:TraesCS3D01G103300 | PANTHER:PTHR36010 | SEG:seg | TMHMM:TMhelix | MapMan:35.1 |
Description
No Description!
Coordinates
chr3D:+:56127605..56128491
Molecular Weight (calculated)
32490.1 Da
IEP (calculated)
10.755
GRAVY (calculated)
0.088
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQLQNFFFF ITSMVVPRGT AAPVLLKWFV SRDVPTGASS SNGTIIRIPI PLFPFLVYLH LRKFIRSMDR AKSGVLVKAS RPILLPDKME RSSSARNALF
101: RFVPVLHFLI IESMGDLSYL ESFCGLLSLQ FFRTLFSLPR DRSAKRERAL RSKGQTLRPK GNEQQNDKMR CPGHPHIERR VEGFGPVAFP APPPSSSGAC
201: LGGVPPESGL EALALPTSRQ LMAVGHDYKK VKTNLSISHG GVCIFMLGVL LSCDPMAYVR PVAHTSYSIC LGRAAWTLIR SGYAIPPLRC SVDS
101: RFVPVLHFLI IESMGDLSYL ESFCGLLSLQ FFRTLFSLPR DRSAKRERAL RSKGQTLRPK GNEQQNDKMR CPGHPHIERR VEGFGPVAFP APPPSSSGAC
201: LGGVPPESGL EALALPTSRQ LMAVGHDYKK VKTNLSISHG GVCIFMLGVL LSCDPMAYVR PVAHTSYSIC LGRAAWTLIR SGYAIPPLRC SVDS
001: MVSECLFRNR RLFGLFVKAQ RNSKHCSCSE EVQFQRWLGS KEVAEPRTKA RNAFSPMNEE MTRRIRSETN SLVSFMYLLA AFAANSQAGE TLSPGSGIDW
101: FRADSGSCCL DYRRIRGAVL GKEMTQLQKK KDRCRLPTRA RSSIGGQEPW SGGKTEVRLL FFREAKLERI EQMVQLHNFF FFIIFMVVPC GTAAPVLLKW
201: FVSRDVPTGA PFSNGTIIPI PISSFPLLVY LHSRKIIRSM DGAKSGVLHA IGQRSVSGRG EGKAKHFGRT GMSNDEMTR
101: FRADSGSCCL DYRRIRGAVL GKEMTQLQKK KDRCRLPTRA RSSIGGQEPW SGGKTEVRLL FFREAKLERI EQMVQLHNFF FFIIFMVVPC GTAAPVLLKW
201: FVSRDVPTGA PFSNGTIIPI PISSFPLLVY LHSRKIIRSM DGAKSGVLHA IGQRSVSGRG EGKAKHFGRT GMSNDEMTR
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: cytochrome C biogenesis 452 (TAIR:ATMG00180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryo /.../2996 (source: NCBI BLink). [Source:TAIR;Acc:AT2G07815]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.