Factsheet for PGSC0003DMT400087800

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, vacuole, cytosol

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G232500.1	Wheat	extracellular	35.82	72.36
TraesCSU01G050200.1	Wheat	endoplasmic reticulum, extracellular	36.82	70.81
TraesCS7B01G429400.1	Wheat	extracellular	36.82	70.81
TraesCS6B01G131800.1	Wheat	endoplasmic reticulum, extracellular	36.82	70.48
HORVU7Hr1G067010.1	Barley	extracellular, plasma membrane, vacuole	48.01	69.93
TraesCS6D01G324000.1	Wheat	endoplasmic reticulum, extracellular	36.32	69.86
TraesCS1D01G128300.1	Wheat	extracellular, plasma membrane, vacuole	47.76	69.82
TraesCS1B01G352800.1	Wheat	extracellular	47.76	69.82
TraesCS1B01G188800.1	Wheat	extracellular, plasma membrane, vacuole	47.76	69.82
TraesCS3B01G121800.1	Wheat	extracellular, plasma membrane, vacuole	47.76	69.57
TraesCS6B01G131500.1	Wheat	endoplasmic reticulum, extracellular	37.81	69.09
TraesCS1B01G475500.1	Wheat	extracellular, plasma membrane, vacuole	47.26	69.09
TraesCS2A01G330700.1	Wheat	extracellular	47.01	68.98
HORVU1Hr1G025070.1	Barley	extracellular	37.56	68.95
TraesCS3D01G197300.1	Wheat	extracellular	47.01	68.73
TraesCS2A01G509000.1	Wheat	endoplasmic reticulum, extracellular	46.77	68.61
TraesCS4D01G146500.1	Wheat	endoplasmic reticulum	46.52	68.25
TraesCS3B01G121300.1	Wheat	endoplasmic reticulum	37.31	68.18
TraesCS6B01G357400.1	Wheat	extracellular, plasma membrane, vacuole	46.27	68.13
TraesCS1B01G065500.1	Wheat	extracellular	35.07	68.12
TraesCS5D01G003300.1	Wheat	extracellular, plasma membrane, vacuole	46.52	68.0
TraesCS4D01G161300.1	Wheat	plasma membrane	46.52	67.75
HORVU0Hr1G010690.1	Barley	endoplasmic reticulum, extracellular, vacuole	36.57	67.43
TraesCS3A01G218900.3	Wheat	extracellular	45.77	67.4
HORVU6Hr1G037070.1	Barley	extracellular, plasma membrane, vacuole	45.77	66.91
TraesCS7B01G047700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	43.28	65.91
TraesCS3D01G103300.1	Wheat	endoplasmic reticulum, vacuole	47.51	64.97
Solyc11g039360.1.1	Tomato	vacuole	53.98	63.08
TraesCS1A01G145400.1	Wheat	plasma membrane, vacuole	42.79	63.0
VIT_03s0063g02270.t01	Wine grape	extracellular	8.96	52.17
BAC19894	Rice	endoplasmic reticulum, plasma membrane	48.76	44.95
CDY45515	Canola	mitochondrion	16.42	32.35
CDY17587	Canola	mitochondrion	16.42	32.35
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	22.39	27.03
AT2G07815.1	Thale cress	mitochondrion	16.17	23.3

Protein Annotations

EnsemblPlants:PGSC0003DMT400087800	EnsemblPlantsGene:PGSC0003DMG400037371	PANTHER:PTHR36010	PGSC:PGSC0003DMG400037371	SEG:seg	UniParc:UPI000296813F
UniProt:M1DEK7	MapMan:35.1	:	:	:	:

Description

Cytochrome c biogenesis [Source:PGSC_GENE;Acc:PGSC0003DMG400037371]

Coordinates

chr4:-:35296725..35299450

Molecular Weight (calculated)

44742.6 Da

IEP (calculated)

10.021

GRAVY (calculated)

-0.021

Length

402 amino acids

Sequence
(BLAST)

001: MVGKGPYSLF CGYAIPSGYA YQIGSRILEY VVTSCTCIRL SIIFDVPARA RIENGHDSPS PRSTVQTGRP FYVPALSRIG PDLIGSDRSF EFRCRTAAEP
101: ERRGTVNLLP RGQAPVLLKW FVSRDVPTGA LFSNGTIIPI PIPSFPLLVY LHSRKFIRSA DGAKSGVLVR ASRPILLPDI IGRSSSETRA RNALFRFVPV
201: LHFLLLESKG DLSYLESFCS VLRLLFFRTF FFLPRDRSAK PERARRRKGQ TLRPNGNEQR RNEMMRCLGH PHLERRVEGF GPVAFPVPLS SGGACVEGAP
301: PEIGLEALTL PTSRELMAVG HDYYQKVPMK MNISHGGVCI FMLDVLLSCD PVAYVRPVAH TSYLFRAGGM NSDSIRVFNP AAEMLSCLLN LDRNMDYSII
401: RA

Best Arabidopsis Sequence Match ( ATMG00180.1 )
(BLAST)

001: MVQLHNFFFF IIFMVVPCGT AAPVLLKWFV SRDVPTGAPF SNGTIIPIPI SSFPLLVYLH SRKIIRSMDG AKSGVLVRAS RPILLPDIIG RSSSETRARK
101: ALFFFVPVLH FRLLESKGDF SYLESFCGVL CLLFFRTFLF LARDRSAKRE RARRRKGQTL RPNGNEQRRN DKMRCSGHPH LDLERRVEGF GPLAFPVPPE
201: LGGACVGGVP PEIGLEALAL PRSRQLMAMA VGHDYYQKVP MKMNISHGGV CICMLGVLLS NTKKIQFTQR LPLGYELHMG KERCCLRGLD HLHGPTFHSI
301: CGNLMIYKPS LTNDRLMFEH DESLHADLLL INFPASYKNG KLEHFLHWWM KNRKHNNFWL TMFPEKRYFR ERTSTAEVAI HTNLFTDLYA SIGTGSSRTG
401: GWYTTIMKLP FIFFIRIGFM LASLGGSPSL LRQLQKDKLR WNRESSVEFI IA

Arabidopsis Description

CCB452CcmFC [Source:UniProtKB/TrEMBL;Acc:G1C2X7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.