Factsheet for TraesCS3A01G218900.3

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G451000.1
TraesCS2A01G239800.1
TraesCS6D01G200900.1
TraesCS6D01G375100.1
TraesCS7D01G238600.1
TraesCS7D01G533300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00180.1	TraesCS1B01G451000.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS2A01G239800.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS6D01G200900.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS6D01G375100.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS7D01G238600.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS7D01G533300.1	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G330700.1	Wheat	extracellular	94.14	93.8
TraesCS2A01G509000.1	Wheat	endoplasmic reticulum, extracellular	93.41	93.07
HORVU6Hr1G037070.1	Barley	extracellular, plasma membrane, vacuole	91.58	90.91
TraesCS3D01G103300.1	Wheat	endoplasmic reticulum, vacuole	93.41	86.73
TraesCS1A01G145400.1	Wheat	plasma membrane, vacuole	86.45	86.45
VIT_03s0063g02270.t01	Wine grape	extracellular	14.65	57.97
BAC19894	Rice	endoplasmic reticulum, plasma membrane	86.81	54.36
Solyc11g039360.1.1	Tomato	vacuole	57.88	45.93
PGSC0003DMT400087800	Potato	cytosol, mitochondrion, plastid, vacuole	67.4	45.77
ATMG00180.1	Thale cress	plasma membrane	71.06	42.92
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	39.56	32.43
CDY17587	Canola	mitochondrion	23.44	31.37
CDY45515	Canola	mitochondrion	23.44	31.37
AT2G07815.1	Thale cress	mitochondrion	23.44	22.94

Protein Annotations

EnsemblPlants:TraesCS3A01G218900.3	EnsemblPlantsGene:TraesCS3A01G218900	PANTHER:PTHR36010	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:401675349..401676176

Molecular Weight (calculated)

30214.3 Da

IEP (calculated)

10.237

GRAVY (calculated)

0.134

Length

273 amino acids

Sequence
(BLAST)

001: MVQLQNFFFF ITSMVMPRGT ATPVLLKWFV SRDVPTGASS SNGTIIPIPI PLPFLVYLHL RKFIHSMDRA KSGVLVKASR PILLPAKMER SSSARNALFF
101: IPALHFLIIE SMGDLSYLES FCDLLCLQFF RTLFSLPRDR SAKRERALQS KGQTLRPKGN EQQNDKMRCP GHPHIERRVE GFGPIAFPAP TSSSGACLWG
201: VPPESGLEAL ALPTSRLLMA VGHDYYKKVK MNLSISHGGV CIFMLGVLLS CDPMAYVRPV AHASYSICSG RAA

Best Arabidopsis Sequence Match ( ATMG00180.1 )
(BLAST)

001: MVQLHNFFFF IIFMVVPCGT AAPVLLKWFV SRDVPTGAPF SNGTIIPIPI SSFPLLVYLH SRKIIRSMDG AKSGVLVRAS RPILLPDIIG RSSSETRARK
101: ALFFFVPVLH FRLLESKGDF SYLESFCGVL CLLFFRTFLF LARDRSAKRE RARRRKGQTL RPNGNEQRRN DKMRCSGHPH LDLERRVEGF GPLAFPVPPE
201: LGGACVGGVP PEIGLEALAL PRSRQLMAMA VGHDYYQKVP MKMNISHGGV CICMLGVLLS NTKKIQFTQR LPLGYELHMG KERCCLRGLD HLHGPTFHSI
301: CGNLMIYKPS LTNDRLMFEH DESLHADLLL INFPASYKNG KLEHFLHWWM KNRKHNNFWL TMFPEKRYFR ERTSTAEVAI HTNLFTDLYA SIGTGSSRTG
401: GWYTTIMKLP FIFFIRIGFM LASLGGSPSL LRQLQKDKLR WNRESSVEFI IA

Arabidopsis Description

CCB452CcmFC [Source:UniProtKB/TrEMBL;Acc:G1C2X7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.