Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G533300.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane | 50.52 | 98.31 |
| TraesCS1B01G451000.1 | Wheat | mitochondrion | 50.35 | 97.97 |
| TraesCS2A01G239800.1 | Wheat | mitochondrion | 49.65 | 96.61 |
| HORVU3Hr1G055030.1 | Barley | mitochondrion, peroxisome, plastid, vacuole | 14.29 | 94.25 |
| TraesCS6D01G200900.1 | Wheat | plastid | 46.86 | 94.06 |
| TraesCS6D01G375100.1 | Wheat | mitochondrion | 48.26 | 89.64 |
| BAC19893 | Rice | endoplasmic reticulum | 91.81 | 88.72 |
| HORVU2Hr1G070240.1 | Barley | golgi, mitochondrion, vacuole | 6.79 | 88.64 |
| ATMG00960.1 | Thale cress | cytosol, peroxisome, plasma membrane | 31.01 | 87.68 |
| HORVU2Hr1G070250.1 | Barley | extracellular, vacuole | 12.54 | 85.71 |
| GRMZM5G867512_P01 | Maize | mitochondrion | 90.42 | 83.71 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 47.91 | 75.34 |
| AT2G07768.1 | Thale cress | mitochondrion | 19.69 | 73.38 |
| CDY69820 | Canola | mitochondrion | 13.59 | 63.93 |
| CDY17575 | Canola | mitochondrion | 12.37 | 56.35 |
| CDY17565 | Canola | mitochondrion | 14.11 | 51.27 |
| CDY45536 | Canola | mitochondrion | 16.2 | 44.71 |
Protein Annotations
| MapMan:2.4.4.2.3.2 | InterPro:Cyt_c_assembly | InterPro:Cyt_c_biogenesis | InterPro:Cyt_c_biogenesis_plant | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015232 |
| GO:GO:0015886 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0017004 | GO:GO:0020037 | PFAM:PF01578 |
| PIRSF:PIRSF005240 | PRINTS:PR01410 | PRINTS:PR01412 | PANTHER:PTHR30009 | PANTHER:PTHR30009:SF23 | TMHMM:TMhelix |
| EnsemblPlantsGene:TraesCS7D01G238600 | EnsemblPlants:TraesCS7D01G238600.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7D:+:203513224..203514948
Molecular Weight (calculated)
64699.7 Da
IEP (calculated)
11.069
GRAVY (calculated)
-0.011
Length
574 amino acids
Sequence
(BLAST)
(BLAST)
001: MSINEFSHYS LFPGLFVAFT YNKKQPPAFG SALAFWCILL PFLGLSFRHI PNNLSNYNVL TANAPFFINS QGHGLIMRVV FYHGVGSQVF MDSFFYRGRP
101: QSHNVSKRRG YRETLIFSFV SNFVKNSILS LQQKSWAAPQ LYTPFVWRTL VDSELRSQSK RPFNGPALFN APLDPVLKMS FALLGAGRSR GSREGKRTNL
201: LLHLARDEKE RASSIDEQQI DRALGIALFF SPFLSVSSDP FVRNFFVRTE PLAESNPVPQ DPISAIHPPC IYAGDVASAM GFGLCRSKMM NGIVALHSPP
301: MRKDAVEKNG TLLRSAGCVG SHIRSSLFTR SFKHFVGGAP ALLLRSNRSL LMLLRRRFFA FSSLWTGALM DTGREQAKRV VRNGKKDTTT SPLCWTAGAN
401: TVVSDQDQEP IRIWILTCRL FLTVGISPGS WWAHHELGRG GWWFRDPVED ASFMPRVLAT ARIHSVILPL LHSWTSLLNI LTLPCCVLGT FSIRSRLLAP
501: VHSSATDDTR GRFLWRFFLL ITGISMTLFY QMKQEASVRR TYKKEMVVAR STLVHLHHSA RAQPRPVMLC YGRI
101: QSHNVSKRRG YRETLIFSFV SNFVKNSILS LQQKSWAAPQ LYTPFVWRTL VDSELRSQSK RPFNGPALFN APLDPVLKMS FALLGAGRSR GSREGKRTNL
201: LLHLARDEKE RASSIDEQQI DRALGIALFF SPFLSVSSDP FVRNFFVRTE PLAESNPVPQ DPISAIHPPC IYAGDVASAM GFGLCRSKMM NGIVALHSPP
301: MRKDAVEKNG TLLRSAGCVG SHIRSSLFTR SFKHFVGGAP ALLLRSNRSL LMLLRRRFFA FSSLWTGALM DTGREQAKRV VRNGKKDTTT SPLCWTAGAN
401: TVVSDQDQEP IRIWILTCRL FLTVGISPGS WWAHHELGRG GWWFRDPVED ASFMPRVLAT ARIHSVILPL LHSWTSLLNI LTLPCCVLGT FSIRSRLLAP
501: VHSSATDDTR GRFLWRFFLL ITGISMTLFY QMKQEASVRR TYKKEMVVAR STLVHLHHSA RAQPRPVMLC YGRI
001: MSISIYEFFH YSLFPGLFVA FTYNKKQPPA FGAAPAFWCI LLSFLGLSFC HIPNNLSNYN VLTANAPFFY QISGTWSNHE GSILLWCRIP NFYGFFLCYR
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY
Arabidopsis Description
CCB382CcmFN1 [Source:UniProtKB/TrEMBL;Acc:G1C2S2]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.