Factsheet for TraesCS1A01G263300.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, extracellular

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, unclear
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

extracellular: 19786127
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G451000.1
TraesCS2A01G239800.1
TraesCS2A01G267400.1
TraesCS2B01G268200.1
TraesCS2D01G256400.1
TraesCS3B01G594200.1
TraesCS3D01G532000.1
TraesCS4A01G057800.1
TraesCS4A01G058100.1
TraesCS4A01G251800.1
TraesCS4A01G256700.1
TraesCS4A01G291900.1
TraesCS4A01G292000.1
TraesCS4A01G292100.1
TraesCS4A01G292200.1
TraesCS4B01G021900.2
TraesCS4B01G022000.1
TraesCS4B01G057900.1
TraesCS4B01G246800.1
TraesCS4B01G247000.1
TraesCS4D01G019600.1
TraesCS4D01G019800.1
TraesCS4D01G019900.1
TraesCS4D01G058000.1
TraesCS4D01G246100.2
TraesCS4D01G246400.1
TraesCS5A01G405900.1
TraesCS5B01G410600.1
TraesCS5D01G415900.1
TraesCS6D01G200900.1
TraesCS6D01G375100.1
TraesCS7D01G238600.1
TraesCS7D01G533300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22840.1	TraesCS2A01G267400.1	AT4G08150.1	21798944
AT1G22840.1	TraesCS2B01G268200.1	AT4G08150.1	21798944
AT1G22840.1	TraesCS2D01G256400.1	AT4G08150.1	21798944
AT1G22840.1	TraesCS4A01G251800.1	AT4G08150.1	21798944
AT1G22840.1	TraesCS4A01G256700.1	AT4G08150.1	21798944
AT1G22840.1	TraesCS4A01G291900.1	AT4G08150.1	21798944
AT1G22840.1	TraesCS4A01G292000.1	AT4G08150.1	21798944
AT1G22840.1	TraesCS4A01G292100.1	AT4G08150.1	21798944
AT1G22840.1	TraesCS4A01G292200.1	AT4G08150.1	21798944
AT1G22840.1	TraesCS4B01G021900.2	AT4G08150.1	21798944
AT1G22840.1	TraesCS4B01G022000.1	AT4G08150.1	21798944
AT1G22840.1	TraesCS4B01G057900.1	AT4G08150.1	21798944
AT1G22840.1	TraesCS4D01G019600.1	AT4G08150.1	21798944
AT1G22840.1	TraesCS4D01G019800.1	AT4G08150.1	21798944
AT1G22840.1	TraesCS4D01G019900.1	AT4G08150.1	21798944
AT1G22840.1	TraesCS4D01G058000.1	AT4G08150.1	21798944
AT1G22840.1	TraesCS5A01G405900.1	AT4G08150.1	21798944
AT1G22840.1	TraesCS5B01G410600.1	AT4G08150.1	21798944
AT1G22840.1	TraesCS5D01G415900.1	AT4G08150.1	21798944
AT1G22840.1	TraesCS1B01G451000.1	ATMG00960.1	18644794
AT1G22840.1	TraesCS2A01G239800.1	ATMG00960.1	18644794
AT1G22840.1	TraesCS6D01G200900.1	ATMG00960.1	18644794
AT1G22840.1	TraesCS6D01G375100.1	ATMG00960.1	18644794
AT1G22840.1	TraesCS7D01G238600.1	ATMG00960.1	18644794
AT1G22840.1	TraesCS7D01G533300.1	ATMG00960.1	18644794
AT4G10040.1	TraesCS3B01G594200.1	AT3G29575.1	21798944
AT4G10040.1	TraesCS3D01G532000.1	AT3G29575.1	21798944
AT4G10040.1	TraesCS4A01G057800.1	AT3G29575.1	21798944
AT4G10040.1	TraesCS4A01G058100.1	AT3G29575.1	21798944
AT4G10040.1	TraesCS4B01G246800.1	AT3G29575.1	21798944
AT4G10040.1	TraesCS4B01G247000.1	AT3G29575.1	21798944
AT4G10040.1	TraesCS4D01G246100.2	AT3G29575.1	21798944
AT4G10040.1	TraesCS4D01G246400.1	AT3G29575.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G263400.1	Wheat	cytosol	100.0	100.0
Bra012346.1-P	Field mustard	cytosol	90.27	91.07
EES18250	Sorghum	cytosol	90.27	91.07
CDY25756	Canola	cytosol	90.27	91.07
CDY12506	Canola	cytosol	90.27	91.07
Zm00001d038218_P001	Maize	mitochondrion	89.38	90.18
Zm00001d010236_P001	Maize	plastid	89.38	90.18
CDY21393	Canola	cytosol	89.38	90.18
CDY04780	Canola	cytosol	89.38	90.18
Bra024541.1-P	Field mustard	cytosol	89.38	90.18
CDX90744	Canola	cytosol	87.61	88.39
Bra000699.1-P	Field mustard	cytosol	87.61	88.39
Bra037901.1-P	Field mustard	cytosol	77.88	88.0
AT1G22840.1	Thale cress	cytosol	88.5	87.72
CDY05083	Canola	cytosol	86.73	87.5
TraesCS3A01G405000.1	Wheat	cytosol	86.73	87.5
AT4G10040.1	Thale cress	cytosol	85.84	86.61
TraesCS1B01G273900.1	Wheat	cytosol	84.96	84.96
CDX99521	Canola	cytosol	77.88	83.02
HORVU1Hr1G063940.1	Barley	cytosol, mitochondrion, nucleus, plastid	100.0	67.26

Protein Annotations

EnsemblPlants:TraesCS1A01G263300.1	EnsemblPlantsGene:TraesCS1A01G263300	Gene3D:1.10.760.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0009055	GO:GO:0020037	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c_1A/1B	InterPro:IPR009056
InterPro:IPR036909	PANTHER:PTHR11961	PANTHER:PTHR11961:SF9	PFAM:PF00034	PFscan:PS51007	PRINTS:PR00604
SUPFAM:SSF46626	MapMan:2.4.4.1	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:458564195..458566062

Molecular Weight (calculated)

12179.4 Da

IEP (calculated)

9.794

GRAVY (calculated)

-0.624

Length

113 amino acids

Sequence
(BLAST)

001: MASFSEAPPG NPDAGAKIFK TKCAQCHTVD AGAGHKQGPN LHGLFGRQSG TTAGYSYSAA NKNKAVEWEE NTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKKA TSS

Best Arabidopsis Sequence Match ( AT1G22840.1 )
(BLAST)

001: MASFDEAPPG NAKAGEKIFR TKCAQCHTVE AGAGHKQGPN LNGLFGRQSG TTAGYSYSAA NKNKAVEWEE KALYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKES TAPK

Arabidopsis Description

CYTC-1CYTC-1 [Source:UniProtKB/TrEMBL;Acc:A0A178W284]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.