Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G247000.1 | Wheat | nucleus | 83.84 | 83.84 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 84.34 | 65.36 |
| Solyc02g066850.1.1 | Tomato | cytosol | 9.09 | 54.55 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 55.56 | 54.46 |
| Solyc06g083290.1.1 | Tomato | cytosol, extracellular, plastid | 8.59 | 50.0 |
| Bra027018.1-P | Field mustard | cytosol | 7.32 | 49.15 |
| AT3G29575.1 | Thale cress | nucleus | 22.22 | 38.1 |
| Os03t0214200-01 | Rice | nucleus | 37.37 | 36.91 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 15.66 | 36.47 |
| CDY00093 | Canola | nucleus | 23.23 | 36.22 |
| Bra036210.1-P | Field mustard | nucleus | 23.23 | 36.08 |
| CDY19988 | Canola | nucleus | 23.23 | 36.08 |
| CDY44386 | Canola | nucleus | 22.22 | 35.06 |
| CDY04085 | Canola | nucleus | 21.97 | 34.94 |
| Bra025400.1-P | Field mustard | nucleus | 23.48 | 34.83 |
| CDX86364 | Canola | nucleus | 23.48 | 34.83 |
| CDX85274 | Canola | nucleus | 23.23 | 34.72 |
| GSMUA_Achr4P14370_001 | Banana | nucleus | 28.79 | 34.03 |
| GSMUA_Achr3P30390_001 | Banana | nucleus | 28.28 | 33.84 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 21.21 | 33.47 |
| Bra026891.1-P | Field mustard | nucleus | 26.01 | 33.33 |
| CDY33807 | Canola | nucleus | 26.01 | 33.33 |
| PGSC0003DMT400036544 | Potato | cytosol | 10.61 | 33.07 |
| CDY16104 | Canola | nucleus | 25.51 | 32.69 |
| Zm00001d048085_P002 | Maize | nucleus | 32.32 | 32.57 |
| EER92642 | Sorghum | nucleus | 32.07 | 32.23 |
| CDY36406 | Canola | nucleus | 23.23 | 31.51 |
| TraesCS2D01G183700.1 | Wheat | nucleus | 24.49 | 31.29 |
| GSMUA_Achr6P27430_001 | Banana | nucleus | 27.53 | 30.7 |
| Solyc02g088910.2.1 | Tomato | nucleus | 24.24 | 30.28 |
| Bra019706.1-P | Field mustard | nucleus | 23.99 | 30.06 |
| Bra004004.1-P | Field mustard | nucleus | 26.26 | 30.06 |
| GSMUA_Achr7P26660_001 | Banana | nucleus | 26.52 | 29.75 |
| CDY07354 | Canola | nucleus | 26.01 | 29.68 |
| Solyc02g032710.1.1 | Tomato | cytosol | 10.1 | 29.63 |
| CDX98125 | Canola | nucleus | 23.74 | 29.47 |
| PGSC0003DMT400003712 | Potato | nucleus | 23.23 | 29.3 |
| Solyc02g066860.1.1 | Tomato | cytosol | 9.6 | 29.23 |
| Solyc02g032680.1.1 | Tomato | cytosol | 8.84 | 29.17 |
| CDY04272 | Canola | nucleus | 25.25 | 28.9 |
| EER89528 | Sorghum | nucleus | 26.01 | 28.85 |
| AT1G69260.1 | Thale cress | nucleus | 25.0 | 28.7 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 26.01 | 28.61 |
| Bra039157.1-P | Field mustard | cytosol | 19.95 | 28.52 |
| Bra033105.1-P | Field mustard | nucleus | 15.66 | 28.44 |
| GSMUA_Achr3P15940_001 | Banana | nucleus | 25.0 | 28.37 |
| CDX74273 | Canola | mitochondrion | 19.44 | 28.21 |
| AT1G13740.1 | Thale cress | nucleus | 24.75 | 28.16 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 19.44 | 27.9 |
| Solyc02g030650.1.1 | Tomato | nucleus | 12.63 | 27.78 |
| KRH54707 | Soybean | nucleus | 17.42 | 27.71 |
| Solyc02g032140.1.1 | Tomato | cytosol | 8.59 | 27.42 |
| CDY43256 | Canola | mitochondrion | 19.19 | 27.14 |
| Bra001031.1-P | Field mustard | mitochondrion | 18.69 | 27.11 |
| KRH63223 | Soybean | nucleus | 17.68 | 26.92 |
| Solyc02g066870.1.1 | Tomato | cytosol | 10.61 | 26.75 |
| CDY40905 | Canola | nucleus | 23.48 | 26.65 |
| PGSC0003DMT400045906 | Potato | nucleus | 26.01 | 26.55 |
| Bra004368.1-P | Field mustard | nucleus | 21.72 | 26.38 |
| CDX91976 | Canola | mitochondrion | 18.94 | 26.32 |
| KRH75067 | Soybean | nucleus | 27.02 | 26.29 |
| KRH01286 | Soybean | nucleus | 25.0 | 26.26 |
| Solyc02g030610.1.1 | Tomato | cytosol | 10.35 | 25.62 |
| CDX95951 | Canola | nucleus | 21.72 | 25.6 |
| PGSC0003DMT400072760 | Potato | nucleus | 26.52 | 25.55 |
| KRH70923 | Soybean | nucleus | 26.52 | 25.55 |
| Solyc02g032690.1.1 | Tomato | cytosol | 15.4 | 25.42 |
| KRH45047 | Soybean | nucleus | 24.49 | 25.33 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 24.49 | 25.06 |
| PGSC0003DMT400089614 | Potato | cytosol | 8.59 | 25.0 |
| Solyc04g005380.2.1 | Tomato | nucleus | 24.24 | 25.0 |
| GSMUA_Achr9P07070_001 | Banana | mitochondrion | 25.51 | 23.71 |
| AT3G02140.1 | Thale cress | cytosol | 18.69 | 23.2 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 7.32 | 22.83 |
| Solyc02g032670.1.1 | Tomato | cytosol | 14.9 | 22.52 |
| Solyc02g030620.1.1 | Tomato | cytosol | 16.67 | 22.3 |
| KRH56804 | Soybean | nucleus | 15.66 | 21.99 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 25.51 | 21.81 |
| CDY34910 | Canola | peroxisome | 15.15 | 21.51 |
| Solyc02g030630.1.1 | Tomato | cytosol | 16.41 | 21.24 |
| Bra040367.1-P | Field mustard | nucleus | 14.9 | 21.15 |
| KRH03141 | Soybean | nucleus | 12.12 | 20.43 |
| VIT_00s0216g00060.t01 | Wine grape | nucleus | 18.43 | 20.39 |
| PGSC0003DMT400051959 | Potato | nucleus | 13.13 | 20.23 |
| CDY08008 | Canola | cytosol | 14.65 | 20.21 |
| Bra001242.1-P | Field mustard | nucleus | 14.39 | 19.79 |
| CDX74054 | Canola | nucleus | 14.39 | 19.79 |
| KRH66123 | Soybean | nucleus | 17.68 | 19.77 |
| Solyc01g058740.2.1 | Tomato | cytosol | 3.54 | 19.72 |
| AT3G07255.1 | Thale cress | nucleus | 14.39 | 19.45 |
| Solyc02g066890.1.1 | Tomato | cytosol | 17.42 | 19.22 |
| Solyc02g066900.1.1 | Tomato | cytosol | 15.15 | 18.93 |
| KRH07456 | Soybean | nucleus | 16.67 | 18.86 |
| Solyc02g032720.1.1 | Tomato | cytosol | 16.92 | 18.11 |
| Solyc02g066840.1.1 | Tomato | cytosol | 6.57 | 17.33 |
| PGSC0003DMT400091590 | Potato | cytosol | 16.16 | 15.69 |
| VIT_17s0000g05280.t01 | Wine grape | nucleus | 16.41 | 15.22 |
| PGSC0003DMT400036545 | Potato | nucleus | 16.16 | 13.09 |
| Solyc02g030600.1.1 | Tomato | cytosol | 6.06 | 11.48 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G246400.1 | EnsemblPlantsGene:TraesCS4D01G246400 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | PANTHER:PTHR31413 | PANTHER:PTHR31413:SF6 |
| PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | SEG:seg | MapMan:15.5.53.3 | : |
Description
No Description!
Coordinates
chr4D:-:414998224..415004847
Molecular Weight (calculated)
41096.3 Da
IEP (calculated)
9.692
GRAVY (calculated)
-0.479
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAYSRDLLR GVGGGGEAGR GEEKPGRLDS QTEEVELSLG LSLGGRFGQE RRRGEGLARS SSVACIQQVT PAPPALARTS SLPPMAEAEA GNSAASLRSG
101: VEVQPQGSGA GAALNGVVVE PAALPRASLS PPSTGSSDGE GKLRASLSPP STGSSDREGI LARTSSLPAG IEDGWRKRKL AETLNKLEMK RSIDRMNSSN
201: ASVGEVGENP DEMSEQAGGK ATVQRMNRTN VRRRLSGLPP PYQPPAASQG PKRNSALKGT PGALERSLSS AVLPSSEGAK SSAVTTPSSS ASVVRAAAPG
301: ISTGEQQDGS ERPAARATRT RSVADMVRKM PVVYTSGLPN GERIDGFLYQ YSRAEEVRIV CVCHGSFLTP AEFVAHAGGS EVTHPMRHIV VNPPSL
101: VEVQPQGSGA GAALNGVVVE PAALPRASLS PPSTGSSDGE GKLRASLSPP STGSSDREGI LARTSSLPAG IEDGWRKRKL AETLNKLEMK RSIDRMNSSN
201: ASVGEVGENP DEMSEQAGGK ATVQRMNRTN VRRRLSGLPP PYQPPAASQG PKRNSALKGT PGALERSLSS AVLPSSEGAK SSAVTTPSSS ASVVRAAAPG
301: ISTGEQQDGS ERPAARATRT RSVADMVRKM PVVYTSGLPN GERIDGFLYQ YSRAEEVRIV CVCHGSFLTP AEFVAHAGGS EVTHPMRHIV VNPPSL
001: MAEANERSKE MARSNSCVFP RDLLQRFISN SVEGEDDDEE EDDDEIELNL GLSLGGRFGV DKSNKLVRSS SVVVTMPLFR EDHHHHQAAA MITTKVSTET
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
Arabidopsis Description
AFP1Ninja-family protein AFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.