Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86364 | Canola | nucleus | 93.58 | 92.88 |
| CDY19988 | Canola | nucleus | 73.21 | 76.08 |
| CDY00093 | Canola | nucleus | 71.7 | 74.8 |
| CDY44386 | Canola | nucleus | 68.3 | 72.11 |
| CDY04085 | Canola | nucleus | 67.55 | 71.89 |
| AT3G29575.1 | Thale cress | nucleus | 62.26 | 71.43 |
| Solyc02g066850.1.1 | Tomato | cytosol | 16.23 | 65.15 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 28.68 | 55.88 |
| PGSC0003DMT400003712 | Potato | nucleus | 52.83 | 44.59 |
| Solyc02g088910.2.1 | Tomato | nucleus | 50.94 | 42.59 |
| PGSC0003DMT400036544 | Potato | cytosol | 18.87 | 39.37 |
| CDY16104 | Canola | nucleus | 44.15 | 37.86 |
| CDY33807 | Canola | nucleus | 44.15 | 37.86 |
| PGSC0003DMT400089614 | Potato | cytosol | 19.25 | 37.5 |
| Solyc02g032680.1.1 | Tomato | cytosol | 16.6 | 36.67 |
| CDY36406 | Canola | nucleus | 39.62 | 35.96 |
| Solyc02g032710.1.1 | Tomato | cytosol | 18.11 | 35.56 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 36.98 | 35.51 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 45.28 | 35.5 |
| CDX98125 | Canola | nucleus | 42.64 | 35.42 |
| CDX74273 | Canola | mitochondrion | 36.23 | 35.16 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 50.94 | 34.88 |
| KRH01286 | Soybean | nucleus | 49.06 | 34.48 |
| HORVU4Hr1G035770.1 | Barley | plastid | 14.34 | 34.23 |
| CDX91976 | Canola | mitochondrion | 36.6 | 34.04 |
| KRH45047 | Soybean | nucleus | 49.06 | 33.94 |
| Solyc02g066870.1.1 | Tomato | cytosol | 20.0 | 33.76 |
| CDY04272 | Canola | nucleus | 43.4 | 33.24 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 15.85 | 33.07 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 35.09 | 32.86 |
| CDY43256 | Canola | mitochondrion | 34.72 | 32.86 |
| CDY07354 | Canola | nucleus | 43.02 | 32.85 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 35.09 | 32.4 |
| Solyc02g066860.1.1 | Tomato | cytosol | 15.85 | 32.31 |
| Solyc02g032690.1.1 | Tomato | cytosol | 29.06 | 32.08 |
| CDX95951 | Canola | nucleus | 40.38 | 31.85 |
| Solyc02g030610.1.1 | Tomato | cytosol | 18.49 | 30.62 |
| Solyc02g030650.1.1 | Tomato | nucleus | 20.75 | 30.56 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 25.66 | 30.09 |
| CDY40905 | Canola | nucleus | 39.25 | 29.8 |
| Solyc02g032670.1.1 | Tomato | cytosol | 27.55 | 27.86 |
| CDY08008 | Canola | cytosol | 29.81 | 27.53 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 17.36 | 27.06 |
| Solyc02g030630.1.1 | Tomato | cytosol | 30.94 | 26.8 |
| CDX74054 | Canola | nucleus | 29.06 | 26.74 |
| Os03t0214200-01 | Rice | nucleus | 39.62 | 26.18 |
| Solyc02g030620.1.1 | Tomato | cytosol | 29.06 | 26.01 |
| EER89528 | Sorghum | nucleus | 34.72 | 25.77 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 22.64 | 24.79 |
| EER92642 | Sorghum | nucleus | 36.6 | 24.62 |
| CDY34910 | Canola | peroxisome | 25.28 | 24.01 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 22.26 | 23.98 |
| Solyc01g058740.2.1 | Tomato | cytosol | 6.42 | 23.94 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 34.72 | 23.23 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 34.34 | 22.98 |
| Zm00001d048085_P002 | Maize | nucleus | 33.96 | 22.9 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 21.13 | 22.31 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 33.21 | 21.78 |
| Solyc02g066900.1.1 | Tomato | cytosol | 26.04 | 21.77 |
| Solyc02g066890.1.1 | Tomato | cytosol | 28.3 | 20.89 |
| Solyc02g066840.1.1 | Tomato | cytosol | 11.32 | 20.0 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 36.23 | 18.79 |
| Solyc02g032720.1.1 | Tomato | cytosol | 25.28 | 18.11 |
| PGSC0003DMT400036545 | Potato | nucleus | 29.43 | 15.95 |
| Solyc02g030600.1.1 | Tomato | cytosol | 10.57 | 13.4 |
Protein Annotations
| EnsemblPlants:CDX85274 | EnsemblPlantsGene:GSBRNA2T00142919001 | GO:A0A078DAG1 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | ncoils:Coil |
| PANTHER:PTHR31413 | PANTHER:PTHR31413:SF6 | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | ProteinID:CDX85274 |
| ProteinID:CDX85274.1 | SEG:seg | UniParc:UPI0004EE0D32 | MapMan:15.5.53.3 | : | : |
Description
BnaC07g25850D
Coordinates
chrLK031841:-:676620..678009
Molecular Weight (calculated)
29296.0 Da
IEP (calculated)
9.678
GRAVY (calculated)
-0.601
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEAVKREDG KIYRNIPRPI SRDLLQSFVS KKNKNMSVED GEVEIELDLG LSLNGRFGVD PLAKTRLLTR SSSIPDFVVN DGRSELLSRT FSLPVETEEW
101: RKRKELQSLR RLEAKRKRSE KQRNVRVLRE KHKTGAGEGE EKIVEEGSIG SSGSGSSGLS ELDNTPPLPC VQAKTNKTIE TSPSSAAPVA RNIIEDMPCV
201: STTGDGPNGK KIDGFLYRYR KGQEVRIVCV CHGSFLSPAE FIKHAGGSDV THPLKHIVVN PSPFL
101: RKRKELQSLR RLEAKRKRSE KQRNVRVLRE KHKTGAGEGE EKIVEEGSIG SSGSGSSGLS ELDNTPPLPC VQAKTNKTIE TSPSSAAPVA RNIIEDMPCV
201: STTGDGPNGK KIDGFLYRYR KGQEVRIVCV CHGSFLSPAE FIKHAGGSDV THPLKHIVVN PSPFL
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
Arabidopsis Description
AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.