Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72108 | Canola | nucleus | 89.2 | 88.84 |
| CDY27189 | Canola | nucleus | 82.8 | 83.81 |
| Bra007274.1-P | Field mustard | nucleus | 90.4 | 80.14 |
| Bra007276.1-P | Field mustard | nucleus | 90.4 | 80.14 |
| CDX67659 | Canola | nucleus | 82.4 | 79.54 |
| CDX76014 | Canola | nucleus | 84.4 | 77.86 |
| AT3G56850.1 | Thale cress | nucleus | 89.6 | 75.42 |
| CDY47381 | Canola | nucleus | 86.4 | 74.48 |
| CDY53679 | Canola | nucleus | 70.8 | 64.6 |
| CDY06946 | Canola | nucleus | 68.0 | 61.59 |
| CDX79959 | Canola | nucleus | 69.2 | 61.35 |
| CDY57581 | Canola | nucleus | 65.6 | 60.29 |
| KRH64894 | Soybean | nucleus | 62.4 | 49.37 |
| KRG94206 | Soybean | nucleus | 63.2 | 49.22 |
| KRG94991 | Soybean | nucleus | 62.8 | 49.06 |
| KRH57716 | Soybean | nucleus | 60.0 | 46.01 |
| PGSC0003DMT400072260 | Potato | nucleus | 61.6 | 44.38 |
| PGSC0003DMT400018574 | Potato | nucleus | 56.4 | 44.2 |
| Solyc10g081350.1.1 | Tomato | nucleus | 61.2 | 43.71 |
| CDY28083 | Canola | nucleus | 36.0 | 37.97 |
| Solyc10g076920.1.1 | Tomato | nucleus | 40.4 | 35.69 |
| CDY65560 | Canola | nucleus | 41.2 | 34.11 |
| CDY51041 | Canola | nucleus | 43.2 | 32.73 |
| CDY17109 | Canola | nucleus | 42.4 | 31.64 |
| CDY68227 | Canola | nucleus | 40.0 | 28.65 |
| CDX69020 | Canola | nucleus | 39.6 | 28.29 |
| CDX92320 | Canola | nucleus | 40.0 | 28.17 |
| CDY18575 | Canola | nucleus | 39.6 | 28.12 |
| CDX99242 | Canola | nucleus | 39.6 | 27.97 |
| CDY63041 | Canola | nucleus | 39.2 | 27.68 |
| CDX84141 | Canola | nucleus | 43.2 | 27.41 |
| CDX75056 | Canola | nucleus | 43.2 | 27.07 |
| CDX82302 | Canola | nucleus | 39.2 | 26.92 |
| CDY43738 | Canola | nucleus | 42.8 | 26.49 |
| CDY10500 | Canola | nucleus | 36.4 | 26.3 |
| CDY08701 | Canola | nucleus | 36.0 | 26.01 |
| CDY58256 | Canola | nucleus | 40.0 | 25.58 |
| CDY22311 | Canola | nucleus, plastid | 27.2 | 25.56 |
| CDY54481 | Canola | nucleus | 29.2 | 25.52 |
| CDX72445 | Canola | nucleus | 41.6 | 25.37 |
| CDY18197 | Canola | nucleus, plastid | 25.6 | 23.79 |
| CDX89852 | Canola | nucleus, plastid | 25.2 | 23.51 |
| CDX71528 | Canola | nucleus | 34.8 | 22.25 |
| CDY22378 | Canola | nucleus | 34.8 | 22.03 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | GO:A0A078IMP9 | UniProt:A0A078IMP9 | EnsemblPlants:CDY51261 | ProteinID:CDY51261 |
| ProteinID:CDY51261.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00003032001 | InterPro:IPR004827 |
| PFAM:PF00170 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF137 | SMART:SM00338 |
| SUPFAM:SSF57959 | UniParc:UPI0004EE86AA | InterPro:bZIP | SEG:seg | : | : |
Description
BnaCnng20400DBnaCnng20400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMP9]
Coordinates
chrLK032979:-:34539..35996
Molecular Weight (calculated)
28089.8 Da
IEP (calculated)
10.466
GRAVY (calculated)
-0.781
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSQRVIVED PKSPSLNRQG SSLYSLTLET HLGSSGKSLG SMNLDGLLKS LSRLGSLTLP RDLSKKTVEE VWKDIRQDKN GGSAHERRDK QHTLGEMTLE
101: DLLLKAGVVT ETIPAQVGPW VLYHQLPSMT QPQPFMPYPV ADMQAMVSQA SLMGGLSDTQ TPGRKRVASG EVVEKTVERK QKRMIKNRES AARSRARKQQ
201: AYTHELEIKV SRLEEENERL RRQKEVEKIL PSAPPPDPKR QLRRTSSAPF
101: DLLLKAGVVT ETIPAQVGPW VLYHQLPSMT QPQPFMPYPV ADMQAMVSQA SLMGGLSDTQ TPGRKRVASG EVVEKTVERK QKRMIKNRES AARSRARKQQ
201: AYTHELEIKV SRLEEENERL RRQKEVEKIL PSAPPPDPKR QLRRTSSAPF
001: MDSQRGIVEQ AKSQSLNRQS SLYSLTLDEV QNHLGSSGKA LGSMNLDELL KSVCSVEANQ PSSMAVNGGA AAQEGLSRQG SLTLPRDLSK KTVDEVWKDI
101: QQNKNGGSAH ERRDKQPTLG EMTLEDLLLK AGVVTETIPG SNHDGPVGGG SAGSGAGLGQ NITQVGPWIQ YHQLPSMPQP QAFMPYPVSD MQAMVSQSSL
201: MGGLSDTQTP GRKRVASGEV VEKTVERRQK RMIKNRESAA RSRARKQAYT HELEIKVSRL EEENERLRKQ KEVEKILPSV PPPDPKRQLR RTSSAPF
101: QQNKNGGSAH ERRDKQPTLG EMTLEDLLLK AGVVTETIPG SNHDGPVGGG SAGSGAGLGQ NITQVGPWIQ YHQLPSMPQP QAFMPYPVSD MQAMVSQSSL
201: MGGLSDTQTP GRKRVASGEV VEKTVERRQK RMIKNRESAA RSRARKQAYT HELEIKVSRL EEENERLRKQ KEVEKILPSV PPPDPKRQLR RTSSAPF
Arabidopsis Description
DPBF3ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LES3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.