CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68022
CDX74273
CDX79255
CDX85274
CDX86364
CDX87455
CDX88436
CDX91676
CDX91976
CDX95951
CDX98125
CDY00093
CDY00447
CDY04085
CDY04272
CDY07354
CDY14618
CDY16104
CDY19988
CDY33807
CDY36406
CDY40905
CDY41483
CDY43256
CDY44386
CDY46646
CDY68672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56850.1	CDX98125	AT1G13740.1	18484180
AT3G56850.1	CDY16104	AT1G13740.1	18484180
AT3G56850.1	CDY33807	AT1G13740.1	18484180
AT3G56850.1	CDY36406	AT1G13740.1	18484180
AT3G56850.1	CDX95951	AT1G69260.1	18484180
AT3G56850.1	CDY04272	AT1G69260.1	18484180
AT3G56850.1	CDY07354	AT1G69260.1	18484180
AT3G56850.1	CDY40905	AT1G69260.1	18484180
AT3G56850.1	CDX68022	AT1G78300.1	21798944
AT3G56850.1	CDX79255	AT1G78300.1	21798944
AT3G56850.1	CDX87455	AT1G78300.1	21798944
AT3G56850.1	CDX88436	AT1G78300.1	21798944
AT3G56850.1	CDX91676	AT1G78300.1	21798944
AT3G56850.1	CDY00447	AT1G78300.1	21798944
AT3G56850.1	CDY14618	AT1G78300.1	21798944
AT3G56850.1	CDY41483	AT1G78300.1	21798944
AT3G56850.1	CDY46646	AT1G78300.1	21798944
AT3G56850.1	CDX74273	AT3G02140.1	18484180
AT3G56850.1	CDX91976	AT3G02140.1	18484180
AT3G56850.1	CDY43256	AT3G02140.1	18484180
AT3G56850.1	CDY68672	AT3G02140.1	18484180
AT3G56850.1	CDX85274	AT3G29575.1	18484180
AT3G56850.1	CDX86364	AT3G29575.1	18484180
AT3G56850.1	CDY00093	AT3G29575.1	18484180
AT3G56850.1	CDY04085	AT3G29575.1	18484180
AT3G56850.1	CDY19988	AT3G29575.1	18484180
AT3G56850.1	CDY44386	AT3G29575.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014668.1-P	Field mustard	nucleus	75.17	95.2
CDX76014	Canola	nucleus	87.93	94.1
CDX72108	Canola	nucleus	78.28	90.44
CDY27189	Canola	nucleus	74.48	87.45
CDY51261	Canola	nucleus	74.48	86.4
CDX67659	Canola	nucleus	72.41	81.08
AT3G56850.1	Thale cress	nucleus	81.72	79.8
CDY53679	Canola	nucleus	63.45	67.15
CDY06946	Canola	nucleus	63.45	66.67
CDX79959	Canola	nucleus	63.45	65.25
CDY57581	Canola	nucleus	60.69	64.71
KRH64894	Soybean	nucleus	56.9	52.22
KRG94991	Soybean	nucleus	56.9	51.56
KRG94206	Soybean	nucleus	56.55	51.09
KRH57716	Soybean	nucleus	53.79	47.85
PGSC0003DMT400072260	Potato	nucleus	55.86	46.69
Solyc10g081350.1.1	Tomato	nucleus	55.52	46.0
PGSC0003DMT400018574	Potato	nucleus	49.66	45.14
CDY28083	Canola	nucleus	31.03	37.97
Solyc10g076920.1.1	Tomato	nucleus	35.86	36.75
CDY65560	Canola	nucleus	36.55	35.1
CDY51041	Canola	nucleus	38.28	33.64
CDY17109	Canola	nucleus	38.28	33.13
CDY68227	Canola	nucleus	35.52	29.51
CDX92320	Canola	nucleus	35.86	29.3
CDX69020	Canola	nucleus	35.17	29.14
CDX99242	Canola	nucleus	35.52	29.1
CDY18575	Canola	nucleus	34.83	28.69
CDX84141	Canola	nucleus	38.97	28.68
CDY63041	Canola	nucleus	34.48	28.25
CDX75056	Canola	nucleus	38.62	28.07
CDX82302	Canola	nucleus	34.48	27.47
CDY10500	Canola	nucleus	32.76	27.46
CDY08701	Canola	nucleus	32.41	27.17
CDY43738	Canola	nucleus	37.59	26.98
CDY58256	Canola	nucleus	35.17	26.09
CDX72445	Canola	nucleus	36.55	25.85
CDY22311	Canola	nucleus, plastid	23.1	25.19
CDY54481	Canola	nucleus	24.83	25.17
CDY18197	Canola	nucleus, plastid	22.07	23.79
CDX71528	Canola	nucleus	31.72	23.53
CDX89852	Canola	nucleus, plastid	21.72	23.51
CDY22378	Canola	nucleus	31.38	23.04

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078IC22	UniProt:A0A078IC22	EnsemblPlants:CDY47381	ProteinID:CDY47381
ProteinID:CDY47381.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00087280001	InterPro:IPR004827
PFAM:PF00170	PANTHER:PTHR22952	PANTHER:PTHR22952:SF137	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0004EEE1A1
InterPro:bZIP	SEG:seg	:	:	:	:

Description

BnaC04g24820DBnaC04g24820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IC22]

Coordinates

chrLK032713:-:86865..88617

Molecular Weight (calculated)

31292.0 Da

IEP (calculated)

9.969

GRAVY (calculated)

-0.772

Length

290 amino acids

Sequence
(BLAST)

001: MDSQREPKSH SLNRQGGSSL YSLTLDEVQT HLGGSGKALG SMNLDELLKS VCSVDVNGAA AAAADTTQEG GGLSRQGSLT LPRDLSKKTV EQVWKDIQQN
101: ANGSSGGANE RRGNNKEPTL GEMTLEDLLL KAGVVTETVT GGGGGGGGGL GQNIPQAGPW VQYHQLPSMP QGQSFMPYPV ADMQAMVSQT SLMGGLSDTQ
201: TPGRKRVASG EVVEKTVERK QKRMIKNRES VARSRARKQQ AYTQELEIKV SRLEEENERL RRQKEVEKIL PSAPPPDPKR QLRRTSSAPF

Best Arabidopsis Sequence Match ( AT3G56850.1 )
(BLAST)

001: MDSQRGIVEQ AKSQSLNRQS SLYSLTLDEV QNHLGSSGKA LGSMNLDELL KSVCSVEANQ PSSMAVNGGA AAQEGLSRQG SLTLPRDLSK KTVDEVWKDI
101: QQNKNGGSAH ERRDKQPTLG EMTLEDLLLK AGVVTETIPG SNHDGPVGGG SAGSGAGLGQ NITQVGPWIQ YHQLPSMPQP QAFMPYPVSD MQAMVSQSSL
201: MGGLSDTQTP GRKRVASGEV VEKTVERRQK RMIKNRESAA RSRARKQAYT HELEIKVSRL EEENERLRKQ KEVEKILPSV PPPDPKRQLR RTSSAPF

Arabidopsis Description

DPBF3ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LES3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.