Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95951 | Canola | nucleus | 65.04 | 67.56 |
| CDY04272 | Canola | nucleus | 47.28 | 47.69 |
| CDY07354 | Canola | nucleus | 46.42 | 46.69 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 17.19 | 44.12 |
| AT1G69260.1 | Thale cress | nucleus | 43.27 | 43.77 |
| CDY04085 | Canola | nucleus | 30.09 | 42.17 |
| CDY19988 | Canola | nucleus | 30.09 | 41.18 |
| CDY44386 | Canola | nucleus | 29.51 | 41.04 |
| CDY00093 | Canola | nucleus | 29.8 | 40.94 |
| CDX85274 | Canola | nucleus | 29.8 | 39.25 |
| CDX86364 | Canola | nucleus | 29.8 | 38.95 |
| CDY33807 | Canola | nucleus | 33.81 | 38.19 |
| CDY16104 | Canola | nucleus | 33.24 | 37.54 |
| CDX98125 | Canola | nucleus | 33.24 | 36.36 |
| CDY36406 | Canola | nucleus | 30.37 | 36.3 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 37.25 | 36.11 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 32.95 | 34.02 |
| PGSC0003DMT400072760 | Potato | nucleus | 38.97 | 33.09 |
| KRH70923 | Soybean | nucleus | 38.4 | 32.6 |
| KRH75067 | Soybean | nucleus | 37.82 | 32.43 |
| PGSC0003DMT400045906 | Potato | nucleus | 35.53 | 31.96 |
| CDX74273 | Canola | mitochondrion | 24.93 | 31.87 |
| HORVU4Hr1G035770.1 | Barley | plastid | 10.03 | 31.53 |
| Solyc04g005380.2.1 | Tomato | nucleus | 32.95 | 29.95 |
| CDX91976 | Canola | mitochondrion | 24.36 | 29.82 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 23.5 | 29.71 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 24.07 | 29.27 |
| CDY43256 | Canola | mitochondrion | 23.21 | 28.93 |
| Os03t0214200-01 | Rice | nucleus | 32.66 | 28.43 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 37.25 | 28.08 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 22.64 | 27.92 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 17.48 | 26.99 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 18.34 | 26.45 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 12.32 | 25.29 |
| EER92642 | Sorghum | nucleus | 27.51 | 24.37 |
| Zm00001d048085_P002 | Maize | nucleus | 26.65 | 23.66 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 16.62 | 23.58 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 26.65 | 23.48 |
| CDY34910 | Canola | peroxisome | 18.62 | 23.3 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 26.36 | 23.23 |
| CDY08008 | Canola | cytosol | 18.91 | 23.0 |
| EER89528 | Sorghum | nucleus | 23.5 | 22.97 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 16.33 | 22.71 |
| CDX74054 | Canola | nucleus | 18.62 | 22.57 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 25.5 | 22.03 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 27.22 | 18.59 |
Protein Annotations
| EnsemblPlants:CDY40905 | EnsemblPlantsGene:GSBRNA2T00071951001 | GO:A0A078HQL5 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | PANTHER:PTHR31413 |
| PANTHER:PTHR31413:SF6 | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | ProteinID:CDY40905 | ProteinID:CDY40905.1 |
| SEG:seg | UniParc:UPI0004EDE748 | UniProt:A0A078HQL5 | MapMan:15.5.53.3 | : | : |
Description
BnaC06g30430DBnaC06g30430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQL5]
Coordinates
chrLK032484:+:34581..35754
Molecular Weight (calculated)
38998.7 Da
IEP (calculated)
10.062
GRAVY (calculated)
-0.716
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEANERSRE MSRSMFPRDL LQRYTPISAK VVNGKEVDEE IELDLSLSLG GRFGVDKSKL ARSSSVVGPT MPFPRENHQP ETEMRPVETS VAGHMGLPRT
101: TSLLVETEEE WRKRKEMESL RRMEARRRRS EKLRGRGSGG GNIIKPTEAN NDSVPGEGST TTRRRGRPRS VLPRWSGTAN EGGLLRQHSS SRLKLELQPN
201: ECINLKIITH TKLVSFCCWK LSLIFDINSS SEEARSLPSP QQQHQQGAMA MPNNGLRRLS SVDMRIEPPP QGNGKKEMPC VFTRGDGPNG KRVDGILYRY
301: GNGEEVKIMC VCHGDILSPA DFVKHAGGPH VDHPLRHIIV NTSSLSNLF
101: TSLLVETEEE WRKRKEMESL RRMEARRRRS EKLRGRGSGG GNIIKPTEAN NDSVPGEGST TTRRRGRPRS VLPRWSGTAN EGGLLRQHSS SRLKLELQPN
201: ECINLKIITH TKLVSFCCWK LSLIFDINSS SEEARSLPSP QQQHQQGAMA MPNNGLRRLS SVDMRIEPPP QGNGKKEMPC VFTRGDGPNG KRVDGILYRY
301: GNGEEVKIMC VCHGDILSPA DFVKHAGGPH VDHPLRHIIV NTSSLSNLF
001: MAEANERSKE MARSNSCVFP RDLLQRFISN SVEGEDDDEE EDDDEIELNL GLSLGGRFGV DKSNKLVRSS SVVVTMPLFR EDHHHHQAAA MITTKVSTET
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
Arabidopsis Description
AFP1Ninja-family protein AFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.