Factsheet for GSMUA_Achr9P09330_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P22710_001
GSMUA_Achr4P32830_001
GSMUA_Achr5P01470_001
GSMUA_Achr6P34980_001
GSMUA_Achr8P07740_001
GSMUA_Achr9P09330_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13740.1	GSMUA_Achr4P32830_001	AT1G13740.1	18484180
AT1G13740.1	GSMUA_Achr5P01470_001	AT1G13740.1	18484180
AT1G13740.1	GSMUA_Achr6P34980_001	AT1G13740.1	18484180
AT1G13740.1	GSMUA_Achr9P09330_001	AT1G13740.1	18484180
AT1G13740.1	GSMUA_Achr4P32830_001	AT1G69260.1	18484180
AT1G13740.1	GSMUA_Achr5P01470_001	AT1G69260.1	18484180
AT1G13740.1	GSMUA_Achr6P34980_001	AT1G69260.1	18484180
AT1G13740.1	GSMUA_Achr9P09330_001	AT1G69260.1	18484180
AT1G13740.1	GSMUA_Achr4P32830_001	AT3G02140.1	18484180
AT1G13740.1	GSMUA_Achr5P01470_001	AT3G02140.1	18484180
AT1G13740.1	GSMUA_Achr6P34980_001	AT3G02140.1	18484180
AT1G13740.1	GSMUA_Achr9P09330_001	AT3G02140.1	18484180
AT1G13740.1	GSMUA_Achr4P32830_001	AT3G29575.1	18484180
AT1G13740.1	GSMUA_Achr5P01470_001	AT3G29575.1	18484180
AT1G13740.1	GSMUA_Achr6P34980_001	AT3G29575.1	18484180
AT1G13740.1	GSMUA_Achr9P09330_001	AT3G29575.1	18484180
AT1G13740.1	GSMUA_Achr3P22710_001	AT3G44460.1	18484180
AT1G13740.1	GSMUA_Achr8P07740_001	AT3G44460.1	18484180
AT1G69260.1	GSMUA_Achr4P32830_001	AT1G13740.1	18484180
AT1G69260.1	GSMUA_Achr5P01470_001	AT1G13740.1	18484180
AT1G69260.1	GSMUA_Achr6P34980_001	AT1G13740.1	18484180
AT1G69260.1	GSMUA_Achr9P09330_001	AT1G13740.1	18484180
AT1G69260.1	GSMUA_Achr4P32830_001	AT3G02140.1	18484180
AT1G69260.1	GSMUA_Achr5P01470_001	AT3G02140.1	18484180
AT1G69260.1	GSMUA_Achr6P34980_001	AT3G02140.1	18484180
AT1G69260.1	GSMUA_Achr9P09330_001	AT3G02140.1	18484180
AT1G69260.1	GSMUA_Achr4P32830_001	AT3G29575.1	18484180
AT1G69260.1	GSMUA_Achr5P01470_001	AT3G29575.1	18484180
AT1G69260.1	GSMUA_Achr6P34980_001	AT3G29575.1	18484180
AT1G69260.1	GSMUA_Achr9P09330_001	AT3G29575.1	18484180
AT1G69260.1	GSMUA_Achr3P22710_001	AT3G44460.1	18484180
AT1G69260.1	GSMUA_Achr8P07740_001	AT3G44460.1	18484180
AT3G02140.1	GSMUA_Achr4P32830_001	AT1G13740.1	18484180
AT3G02140.1	GSMUA_Achr5P01470_001	AT1G13740.1	18484180
AT3G02140.1	GSMUA_Achr6P34980_001	AT1G13740.1	18484180
AT3G02140.1	GSMUA_Achr9P09330_001	AT1G13740.1	18484180
AT3G02140.1	GSMUA_Achr4P32830_001	AT1G69260.1	18484180
AT3G02140.1	GSMUA_Achr5P01470_001	AT1G69260.1	18484180
AT3G02140.1	GSMUA_Achr6P34980_001	AT1G69260.1	18484180
AT3G02140.1	GSMUA_Achr9P09330_001	AT1G69260.1	18484180
AT3G02140.1	GSMUA_Achr4P32830_001	AT3G02140.1	18484180
AT3G02140.1	GSMUA_Achr5P01470_001	AT3G02140.1	18484180
AT3G02140.1	GSMUA_Achr6P34980_001	AT3G02140.1	18484180
AT3G02140.1	GSMUA_Achr9P09330_001	AT3G02140.1	18484180
AT3G02140.1	GSMUA_Achr3P22710_001	AT3G44460.1	18484180
AT3G02140.1	GSMUA_Achr8P07740_001	AT3G44460.1	18484180
AT3G29575.1	GSMUA_Achr4P32830_001	AT1G13740.1	18484180
AT3G29575.1	GSMUA_Achr5P01470_001	AT1G13740.1	18484180
AT3G29575.1	GSMUA_Achr6P34980_001	AT1G13740.1	18484180
AT3G29575.1	GSMUA_Achr9P09330_001	AT1G13740.1	18484180
AT3G29575.1	GSMUA_Achr4P32830_001	AT1G69260.1	18484180
AT3G29575.1	GSMUA_Achr5P01470_001	AT1G69260.1	18484180
AT3G29575.1	GSMUA_Achr6P34980_001	AT1G69260.1	18484180
AT3G29575.1	GSMUA_Achr9P09330_001	AT1G69260.1	18484180
AT3G29575.1	GSMUA_Achr4P32830_001	AT3G29575.1	18484180
AT3G29575.1	GSMUA_Achr5P01470_001	AT3G29575.1	18484180
AT3G29575.1	GSMUA_Achr6P34980_001	AT3G29575.1	18484180
AT3G29575.1	GSMUA_Achr9P09330_001	AT3G29575.1	18484180
AT3G29575.1	GSMUA_Achr3P22710_001	AT3G44460.1	18484180
AT3G29575.1	GSMUA_Achr8P07740_001	AT3G44460.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g066850.1.1	Tomato	cytosol	13.31	68.18
GSMUA_Achr4P32830_001	Banana	nucleus	25.44	63.24
Solyc06g083290.1.1	Tomato	cytosol, extracellular, plastid	11.83	58.82
AT3G29575.1	Thale cress	nucleus	36.39	53.25
GSMUA_Achr6P34980_001	Banana	cytosol	44.38	53.0
Bra027018.1-P	Field mustard	cytosol	9.17	52.54
CDY19988	Canola	nucleus	37.28	49.41
Bra036210.1-P	Field mustard	nucleus	37.28	49.41
CDY00093	Canola	nucleus	36.98	49.21
CDY04085	Canola	nucleus	35.21	47.79
CDY44386	Canola	nucleus	35.21	47.41
CDX86364	Canola	nucleus	35.8	45.32
Bra025400.1-P	Field mustard	nucleus	35.8	45.32
CDX85274	Canola	nucleus	35.5	45.28
GSMUA_Achr5P01470_001	Banana	nucleus	37.87	44.6
PGSC0003DMT400003712	Potato	nucleus	40.24	43.31
Solyc02g088910.2.1	Tomato	nucleus	40.24	42.9
Bra033105.1-P	Field mustard	nucleus	26.92	41.74
GSMUA_Achr4P14370_001	Banana	nucleus	40.83	41.19
GSMUA_Achr3P30390_001	Banana	nucleus	39.65	40.48
VIT_01s0011g00410.t01	Wine grape	nucleus	42.9	40.28
PGSC0003DMT400036544	Potato	cytosol	15.09	40.16
GSMUA_Achr3P15940_001	Banana	nucleus	41.42	40.11
Bra026891.1-P	Field mustard	nucleus	34.91	38.19
CDY33807	Canola	nucleus	34.91	38.19
CDY36406	Canola	nucleus	32.54	37.67
CDY16104	Canola	nucleus	34.32	37.54
Solyc02g032710.1.1	Tomato	cytosol	14.79	37.04
Bra019706.1-P	Field mustard	nucleus	34.62	37.03
Bra004004.1-P	Field mustard	nucleus	36.98	36.13
CDX98125	Canola	nucleus	34.02	36.05
CDY07354	Canola	nucleus	36.98	36.02
GSMUA_Achr7P26660_001	Banana	nucleus	37.28	35.69
VIT_14s0068g00300.t01	Wine grape	nucleus	40.83	35.66
AT1G69260.1	Thale cress	nucleus	36.39	35.65
Solyc02g030610.1.1	Tomato	cytosol	16.86	35.62
Bra004368.1-P	Field mustard	nucleus	34.32	35.58
PGSC0003DMT400089614	Potato	cytosol	14.2	35.29
GSMUA_Achr6P27430_001	Banana	nucleus	36.98	35.21
CDX95951	Canola	nucleus	34.91	35.12
Solyc02g032680.1.1	Tomato	cytosol	12.43	35.0
CDY04272	Canola	nucleus	35.5	34.68
Solyc02g066870.1.1	Tomato	cytosol	15.98	34.39
CDX74273	Canola	mitochondrion	27.51	34.07
AT1G13740.1	Thale cress	nucleus	34.91	33.91
Solyc02g032690.1.1	Tomato	cytosol	23.96	33.75
GSMUA_Achr9P07070_001	Banana	mitochondrion	42.31	33.57
CDX91976	Canola	mitochondrion	28.11	33.33
PGSC0003DMT400045906	Potato	nucleus	38.17	33.25
KRH75067	Soybean	nucleus	39.94	33.17
KRH01286	Soybean	nucleus	36.98	33.16
KRH70923	Soybean	nucleus	40.24	33.09
PGSC0003DMT400095238	Potato	cytosol, mitochondrion	12.43	33.07
CDY40905	Canola	nucleus	34.02	32.95
Solyc02g066860.1.1	Tomato	cytosol	12.43	32.31
Solyc04g005380.2.1	Tomato	nucleus	36.69	32.29
Bra001031.1-P	Field mustard	mitochondrion	26.04	32.23
Solyc02g030650.1.1	Tomato	nucleus	17.16	32.22
CDY68672	Canola	cytosol, mitochondrion, nucleus, plastid	26.04	31.88
KRH45047	Soybean	nucleus	35.8	31.59
Solyc02g032140.1.1	Tomato	cytosol	11.54	31.45
Bra039157.1-P	Field mustard	cytosol	25.74	31.41
KRH54707	Soybean	nucleus	22.78	30.92
CDY43256	Canola	mitochondrion	25.44	30.71
KRH63223	Soybean	nucleus	22.78	29.62
PGSC0003DMT400072760	Potato	nucleus	35.5	29.2
Solyc02g030630.1.1	Tomato	cytosol	25.44	28.1
Solyc02g030620.1.1	Tomato	cytosol	24.56	28.04
Solyc02g032670.1.1	Tomato	cytosol	21.6	27.86
Solyc01g058740.2.1	Tomato	cytosol	5.33	25.35
Solyc05g012210.2.1	Tomato	extracellular, golgi	34.62	25.27
CDY08008	Canola	cytosol	21.3	25.09
CDY34910	Canola	peroxisome	20.41	24.73
Bra040367.1-P	Field mustard	nucleus	20.12	24.37
Solyc02g066900.1.1	Tomato	cytosol	22.78	24.29
AT3G02140.1	Thale cress	cytosol	22.49	23.82
KRH56804	Soybean	nucleus	19.82	23.76
CDX74054	Canola	nucleus	20.12	23.61
Bra001242.1-P	Field mustard	nucleus	20.12	23.61
PGSC0003DMT400051959	Potato	nucleus	17.75	23.35
KRH07456	Soybean	nucleus	23.96	23.14
KRH66123	Soybean	nucleus	23.96	22.88
KRH03141	Soybean	nucleus	15.68	22.55
AT3G07255.1	Thale cress	nucleus	18.64	21.5
Solyc02g032720.1.1	Tomato	cytosol	23.37	21.35
VIT_00s0216g00060.t01	Wine grape	nucleus	22.49	21.23
Solyc02g066890.1.1	Tomato	cytosol	22.49	21.17
Solyc02g066840.1.1	Tomato	cytosol	9.17	20.67
VIT_17s0000g05280.t01	Wine grape	nucleus	20.41	16.16
PGSC0003DMT400036545	Potato	nucleus	23.37	16.16
Solyc02g030600.1.1	Tomato	cytosol	9.47	15.31
PGSC0003DMT400091590	Potato	cytosol	17.16	14.22

Protein Annotations

EnsemblPlants:GSMUA_Achr9P09330_001	EnsemblPlants:GSMUA_Achr9T09330_001	EnsemblPlantsGene:GSMUA_Achr9G09330_001	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Jas	InterPro:NINJA_B	InterPro:Ninja_fam	InterPro:Ninja_motif	ncoils:Coil
PANTHER:PTHR31413	PANTHER:PTHR31413:SF6	PFAM:PF07897	PFAM:PF16135	PFAM:PF16136	SEG:seg
UniParc:UPI0002967607	UniProt:M0TYU2	MapMan:15.5.53.3	:	:	:

Description

Putative Ninja-family protein AFP2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G09330_001]

Coordinates

chr9:+:6099381..6100747

Molecular Weight (calculated)

36354.1 Da

IEP (calculated)

9.865

GRAVY (calculated)

-0.610

Length

338 amino acids

Sequence
(BLAST)

001: MEEKLSVRAE GYQKDFLRRF GAGGGGQGEG TEGGESEDIE LSLGLSLGGR FGVEPKEKRL VRSSSISTLP VERDLAMVPP LARTCSLQAE AQEELRKRKE
101: LQSLKRLEAK RRRSEKLSSK SRIADRKGDI FDEETAGSRN RVAPHGLPLW IAGAGRAAAQ PTEAPRRFGL VSQGSIGSQG SSCSSVSDVE SQPKQGSRNS
201: PRVGSPMTAM LSPEHGSHKA VSDHTTAAAV GKHVAGVTGE EGQSRKATEG ALDDRVREKA GRNMVERMPC VSTRGDGPNG RRIEGFLYKY RKGEEVKIVC
301: VCHGSFFTPA EFVKHAGGGE VAHPLRHIVV DTLPSAFL

Best Arabidopsis Sequence Match ( AT1G13740.1 )
(BLAST)

001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF

Arabidopsis Description

AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.