Factsheet for PGSC0003DMT400051959

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g083290.1.1	Tomato	cytosol, extracellular, plastid	24.51	92.65
Bra027018.1-P	Field mustard	cytosol	13.23	57.63
GSMUA_Achr4P32830_001	Banana	nucleus	16.73	31.62
HORVU4Hr1G035770.1	Barley	plastid	13.23	30.63
PGSC0003DMT400036544	Potato	cytosol	14.01	28.35
PGSC0003DMT400095238	Potato	cytosol, mitochondrion	13.23	26.77
PGSC0003DMT400089614	Potato	cytosol	13.23	25.0
TraesCS3D01G532000.1	Wheat	nucleus	16.34	24.71
Bra001242.1-P	Field mustard	nucleus	25.29	22.57
CDX74054	Canola	nucleus	25.29	22.57
CDY08008	Canola	cytosol	23.74	21.25
CDY34910	Canola	peroxisome	22.96	21.15
Bra040367.1-P	Field mustard	nucleus	22.96	21.15
GSMUA_Achr6P34980_001	Banana	cytosol	22.96	20.85
TraesCS3B01G594200.1	Wheat	cytosol	17.12	19.47
AT3G07255.1	Thale cress	nucleus	21.4	18.77
KRH07456	Soybean	nucleus	25.29	18.57
PGSC0003DMT400003712	Potato	nucleus	22.18	18.15
GSMUA_Achr5P01470_001	Banana	nucleus	20.23	18.12
KRH66123	Soybean	nucleus	24.9	18.08
VIT_00s0216g00060.t01	Wine grape	nucleus	24.9	17.88
TraesCS4B01G246800.1	Wheat	nucleus	16.73	17.77
GSMUA_Achr9P09330_001	Banana	nucleus	23.35	17.75
TraesCS4D01G246100.2	Wheat	nucleus	16.34	16.73
EER89528	Sorghum	nucleus	22.96	16.53
TraesCS4A01G058100.1	Wheat	nucleus	15.56	16.26
EER92642	Sorghum	nucleus	23.35	15.23
Zm00001d048085_P002	Maize	nucleus	22.96	15.01
PGSC0003DMT400045906	Potato	nucleus	22.57	14.95
Os03t0214200-01	Rice	nucleus	22.57	14.46
PGSC0003DMT400072760	Potato	nucleus	22.96	14.36
TraesCS4D01G246400.1	Wheat	nucleus	20.23	13.13
TraesCS4B01G247000.1	Wheat	nucleus	19.46	12.63
HORVU4Hr1G067930.1	Barley	nucleus	18.68	11.88
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	21.01	10.57
PGSC0003DMT400091590	Potato	cytosol	15.95	10.05
PGSC0003DMT400036545	Potato	nucleus	17.9	9.41

Protein Annotations

EnsemblPlants:PGSC0003DMT400051959	EnsemblPlantsGene:PGSC0003DMG400020167	EntrezGene:102593813	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Jas	InterPro:Ninja_fam	PANTHER:PTHR31413	PANTHER:PTHR31413:SF10	PFAM:PF16135
PGSC:PGSC0003DMG400020167	RefSeq:XP_006352677.2	SEG:seg	UniParc:UPI000295CE21	UniProt:M1BSJ2	MapMan:15.5.53.3

Description

RNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020167]

Coordinates

chr6:+:58250186..58251048

Molecular Weight (calculated)

28894.5 Da

IEP (calculated)

8.299

GRAVY (calculated)

-0.670

Length

257 amino acids

Sequence
(BLAST)

001: MLELMKGDFD EDENGIGLSL SLSIGGNYTK KNDQVFNSDD KMLIEWQRSK KRVLHREMME NEELIWRKSK ISTSGSEGVK SLNLFMNQDS CVNDHNLVVP
101: ICDHRNVGKR ESMRKNCRGF RIYNSNTSYN QCRSSESNGS MERCSSTITK CQSSSPKGRS SSNVMSIKEE QDQKTEEKRN CGMIQLLSRM PCVSATGNGP
201: NGKTINGLLC KYDNKMEINI VCVCHGKSFS PSQFVEHAGA VDLSQPLKHI TVIPPCF

Best Arabidopsis Sequence Match ( AT3G07255.1 )
(BLAST)

001: MFVESLSMAE KFVEDENVEV ELELELCLSL GGPFKKTEKS KTFGQSNAVG FEKDNGVNLD GRTTNVTRIK ETRKKREAKQ QQRSGEEGEC KRIRTEYNGV
101: SNGDDMDLSS INMCNGYGSG RLKESSKDVT IGSPICTSSS VSDPSSSSRQ EGGSGDIGAQ SGQTKQVRSP VNNILTGTEQ TVHNTDGSKD AETQEWSNSS
201: VTKESGKPPK PHTNSNGNGS LLPFAQMPCV TSTGNGPEGK TVNGFLYRYS KSEISIICVC HGTSFSPAEF IVHAGGTNVS HPLRHITVVP STL

Arabidopsis Description

Nuclear transport factor 2/RNA recognition motif protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.