Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g066850.1.1 | Tomato | cytosol | 14.84 | 63.64 |
| Solyc06g083290.1.1 | Tomato | cytosol, extracellular, plastid | 13.43 | 55.88 |
| Bra027018.1-P | Field mustard | cytosol | 10.6 | 50.85 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 22.97 | 47.79 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 53.0 | 44.38 |
| AT3G29575.1 | Thale cress | nucleus | 33.22 | 40.69 |
| CDY19988 | Canola | nucleus | 35.34 | 39.22 |
| Bra036210.1-P | Field mustard | nucleus | 35.34 | 39.22 |
| CDY00093 | Canola | nucleus | 34.98 | 38.98 |
| PGSC0003DMT400036544 | Potato | cytosol | 16.96 | 37.8 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 37.46 | 36.93 |
| CDY44386 | Canola | nucleus | 32.51 | 36.65 |
| CDY04085 | Canola | nucleus | 32.16 | 36.55 |
| Solyc02g032710.1.1 | Tomato | cytosol | 16.96 | 35.56 |
| CDX85274 | Canola | nucleus | 32.86 | 35.09 |
| PGSC0003DMT400089614 | Potato | cytosol | 16.61 | 34.56 |
| CDX86364 | Canola | nucleus | 32.51 | 34.46 |
| Bra025400.1-P | Field mustard | nucleus | 32.51 | 34.46 |
| Solyc02g032680.1.1 | Tomato | cytosol | 14.49 | 34.17 |
| Solyc02g030610.1.1 | Tomato | cytosol | 18.37 | 32.5 |
| Solyc02g066870.1.1 | Tomato | cytosol | 17.67 | 31.85 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 40.28 | 31.67 |
| Solyc02g066860.1.1 | Tomato | cytosol | 14.13 | 30.77 |
| Bra033105.1-P | Field mustard | nucleus | 23.32 | 30.28 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 13.43 | 29.92 |
| Solyc02g032140.1.1 | Tomato | cytosol | 13.07 | 29.84 |
| GSMUA_Achr3P30390_001 | Banana | nucleus | 34.28 | 29.31 |
| GSMUA_Achr4P14370_001 | Banana | nucleus | 34.63 | 29.25 |
| Solyc02g088910.2.1 | Tomato | nucleus | 32.16 | 28.71 |
| PGSC0003DMT400003712 | Potato | nucleus | 31.8 | 28.66 |
| CDY36406 | Canola | nucleus | 29.33 | 28.42 |
| CDY33807 | Canola | nucleus | 30.39 | 27.83 |
| Bra026891.1-P | Field mustard | nucleus | 30.39 | 27.83 |
| GSMUA_Achr3P15940_001 | Banana | nucleus | 34.28 | 27.79 |
| CDY16104 | Canola | nucleus | 30.04 | 27.51 |
| GSMUA_Achr6P27430_001 | Banana | nucleus | 34.28 | 27.32 |
| Bra019706.1-P | Field mustard | nucleus | 30.39 | 27.22 |
| CDX98125 | Canola | nucleus | 30.04 | 26.65 |
| GSMUA_Achr7P26660_001 | Banana | nucleus | 33.22 | 26.63 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 36.4 | 26.61 |
| Bra004004.1-P | Field mustard | nucleus | 32.51 | 26.59 |
| CDY07354 | Canola | nucleus | 32.51 | 26.51 |
| AT1G13740.1 | Thale cress | nucleus | 31.8 | 25.86 |
| CDY04272 | Canola | nucleus | 31.45 | 25.72 |
| KRH70923 | Soybean | nucleus | 37.1 | 25.55 |
| PGSC0003DMT400045906 | Potato | nucleus | 34.98 | 25.52 |
| AT1G69260.1 | Thale cress | nucleus | 30.74 | 25.22 |
| KRH01286 | Soybean | nucleus | 33.57 | 25.2 |
| KRH75067 | Soybean | nucleus | 36.04 | 25.06 |
| Solyc02g032690.1.1 | Tomato | cytosol | 21.2 | 25.0 |
| GSMUA_Achr9P07070_001 | Banana | mitochondrion | 37.1 | 24.65 |
| KRH45047 | Soybean | nucleus | 33.22 | 24.54 |
| Solyc04g005380.2.1 | Tomato | nucleus | 32.51 | 23.96 |
| Solyc01g058740.2.1 | Tomato | cytosol | 6.01 | 23.94 |
| CDX95951 | Canola | nucleus | 28.27 | 23.81 |
| KRH54707 | Soybean | nucleus | 20.85 | 23.69 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 22.97 | 23.55 |
| CDX74273 | Canola | mitochondrion | 22.61 | 23.44 |
| Bra001031.1-P | Field mustard | mitochondrion | 22.61 | 23.44 |
| Solyc02g030650.1.1 | Tomato | nucleus | 14.84 | 23.33 |
| Bra004368.1-P | Field mustard | nucleus | 26.86 | 23.31 |
| Bra039157.1-P | Field mustard | cytosol | 22.61 | 23.1 |
| PGSC0003DMT400051959 | Potato | nucleus | 20.85 | 22.96 |
| CDY43256 | Canola | mitochondrion | 22.61 | 22.86 |
| CDY40905 | Canola | nucleus | 27.92 | 22.64 |
| CDX91976 | Canola | mitochondrion | 22.61 | 22.46 |
| Solyc02g032670.1.1 | Tomato | cytosol | 20.49 | 22.14 |
| PGSC0003DMT400072760 | Potato | nucleus | 31.8 | 21.9 |
| Solyc02g030620.1.1 | Tomato | cytosol | 22.61 | 21.62 |
| CDY08008 | Canola | cytosol | 21.91 | 21.6 |
| KRH63223 | Soybean | nucleus | 19.79 | 21.54 |
| Bra001242.1-P | Field mustard | nucleus | 21.55 | 21.18 |
| CDX74054 | Canola | nucleus | 21.55 | 21.18 |
| CDY34910 | Canola | peroxisome | 20.85 | 21.15 |
| Solyc02g030630.1.1 | Tomato | cytosol | 22.61 | 20.91 |
| Bra040367.1-P | Field mustard | nucleus | 20.49 | 20.79 |
| KRH03141 | Soybean | nucleus | 16.96 | 20.43 |
| Solyc02g066900.1.1 | Tomato | cytosol | 21.91 | 19.56 |
| KRH56804 | Soybean | nucleus | 19.43 | 19.5 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 31.45 | 19.22 |
| AT3G07255.1 | Thale cress | nucleus | 19.79 | 19.11 |
| KRH66123 | Soybean | nucleus | 23.67 | 18.93 |
| KRH07456 | Soybean | nucleus | 23.32 | 18.86 |
| AT3G02140.1 | Thale cress | cytosol | 20.14 | 17.87 |
| VIT_00s0216g00060.t01 | Wine grape | nucleus | 22.26 | 17.6 |
| Solyc02g066890.1.1 | Tomato | cytosol | 21.2 | 16.71 |
| Solyc02g032720.1.1 | Tomato | cytosol | 21.2 | 16.22 |
| VIT_17s0000g05280.t01 | Wine grape | nucleus | 19.79 | 13.11 |
| PGSC0003DMT400091590 | Potato | cytosol | 18.02 | 12.5 |
| PGSC0003DMT400036545 | Potato | nucleus | 21.55 | 12.47 |
| Solyc02g066840.1.1 | Tomato | cytosol | 6.36 | 12.0 |
| Solyc02g030600.1.1 | Tomato | cytosol | 7.42 | 10.05 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P34980_001 | EnsemblPlants:GSMUA_Achr6T34980_001 | EnsemblPlantsGene:GSMUA_Achr6G34980_001 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:Jas | InterPro:Ninja_fam | PANTHER:PTHR31413 | PANTHER:PTHR31413:SF6 | PFAM:PF16135 |
| SEG:seg | UniParc:UPI000296386F | UniProt:M0TCU1 | MapMan:15.5.53.3 | : | : |
Description
RNA binding protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr6G34980_001]
Coordinates
chr6:-:33353140..33355643
Molecular Weight (calculated)
30277.2 Da
IEP (calculated)
9.507
GRAVY (calculated)
-0.432
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEELSARAP GCQKDFLTRF GAGGGEQGEK RTPWGDGGSG ETELSLGLSL GGRVGLEPKE KRLSKELQGL KRLEANGTVG RKNKIFDKEF ARFRNGVVLH
101: RPPAWADTAG RVDASKRFGL ASPVSIGSEG SSCSSLYDID SQPNQGLSNI SEVRSSLTAT ALSDQSICKP KATVLGQHVT CVTEVDDRPR KAARGGPKTK
201: VLEKVGKKMI QDMPCVSTIG DGPNGRRIEG LLYKYGKGEE VKIVCVCHGS FFSPAEFVKH AGSGDVAHPL RHIVVSTLPA KFL
101: RPPAWADTAG RVDASKRFGL ASPVSIGSEG SSCSSLYDID SQPNQGLSNI SEVRSSLTAT ALSDQSICKP KATVLGQHVT CVTEVDDRPR KAARGGPKTK
201: VLEKVGKKMI QDMPCVSTIG DGPNGRRIEG LLYKYGKGEE VKIVCVCHGS FFSPAEFVKH AGSGDVAHPL RHIVVSTLPA KFL
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
Arabidopsis Description
AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.