Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 53.29 | 61.59 |
| Bra039157.1-P | Field mustard | cytosol | 52.66 | 60.65 |
| CDY43256 | Canola | mitochondrion | 51.41 | 58.57 |
| Solyc02g066850.1.1 | Tomato | cytosol | 11.6 | 56.06 |
| CDX91976 | Canola | mitochondrion | 48.28 | 54.04 |
| CDX74273 | Canola | mitochondrion | 43.57 | 50.92 |
| Bra001031.1-P | Field mustard | mitochondrion | 43.26 | 50.55 |
| PGSC0003DMT400036544 | Potato | cytosol | 15.36 | 38.58 |
| AT3G29575.1 | Thale cress | nucleus | 26.96 | 37.23 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 14.73 | 34.56 |
| Solyc02g032680.1.1 | Tomato | cytosol | 12.54 | 33.33 |
| HORVU4Hr1G035770.1 | Barley | plastid | 11.6 | 33.33 |
| Solyc02g066860.1.1 | Tomato | cytosol | 13.48 | 33.08 |
| Solyc02g032710.1.1 | Tomato | cytosol | 13.79 | 32.59 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 12.23 | 30.71 |
| Solyc02g030610.1.1 | Tomato | cytosol | 15.36 | 30.62 |
| PGSC0003DMT400089614 | Potato | cytosol | 12.54 | 29.41 |
| PGSC0003DMT400003712 | Potato | nucleus | 28.53 | 28.98 |
| Solyc02g066870.1.1 | Tomato | cytosol | 14.11 | 28.66 |
| Solyc02g088910.2.1 | Tomato | nucleus | 27.9 | 28.08 |
| Solyc02g030650.1.1 | Tomato | nucleus | 15.36 | 27.22 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 13.48 | 25.29 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 19.12 | 25.21 |
| Solyc02g032690.1.1 | Tomato | cytosol | 18.81 | 25.0 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 19.44 | 24.7 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 17.24 | 24.34 |
| Solyc01g058740.2.1 | Tomato | cytosol | 5.33 | 23.94 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 28.84 | 23.77 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 18.18 | 23.58 |
| AT1G13740.1 | Thale cress | nucleus | 25.08 | 22.99 |
| KRH01286 | Soybean | nucleus | 26.96 | 22.81 |
| AT1G69260.1 | Thale cress | nucleus | 24.45 | 22.61 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 23.82 | 22.49 |
| KRH45047 | Soybean | nucleus | 26.65 | 22.19 |
| Solyc02g032670.1.1 | Tomato | cytosol | 18.18 | 22.14 |
| Solyc02g030630.1.1 | Tomato | cytosol | 20.69 | 21.57 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 19.12 | 21.25 |
| Solyc02g030620.1.1 | Tomato | cytosol | 18.81 | 20.27 |
| Os03t0214200-01 | Rice | nucleus | 25.39 | 20.2 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 17.87 | 20.14 |
| Zm00001d048085_P002 | Maize | nucleus | 24.76 | 20.1 |
| AT3G07255.1 | Thale cress | nucleus | 17.87 | 19.45 |
| EER92642 | Sorghum | nucleus | 23.82 | 19.29 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 23.82 | 19.19 |
| EER89528 | Sorghum | nucleus | 21.0 | 18.77 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 23.2 | 18.69 |
| Solyc02g066900.1.1 | Tomato | cytosol | 18.18 | 18.3 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 22.88 | 18.07 |
| Solyc02g066890.1.1 | Tomato | cytosol | 19.75 | 17.55 |
| Solyc02g066840.1.1 | Tomato | cytosol | 7.52 | 16.0 |
| Solyc02g032720.1.1 | Tomato | cytosol | 17.87 | 15.41 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 23.51 | 14.68 |
| PGSC0003DMT400036545 | Potato | nucleus | 21.0 | 13.7 |
| Solyc02g030600.1.1 | Tomato | cytosol | 6.9 | 10.53 |
Protein Annotations
| MapMan:15.5.53.3 | EntrezGene:821182 | UniProt:A0A178VMX2 | ProteinID:AAF02123.1 | ProteinID:AAF14824.1 | ProteinID:AEE73768.1 |
| ArrayExpress:AT3G02140 | EnsemblPlantsGene:AT3G02140 | RefSeq:AT3G02140 | TAIR:AT3G02140 | RefSeq:AT3G02140-TAIR-G | EnsemblPlants:AT3G02140.1 |
| TAIR:AT3G02140.1 | EMBL:AY034949 | EMBL:AY062992 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005975 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 |
| GO:GO:0009737 | GO:GO:0009788 | GO:GO:0009987 | GO:GO:0010581 | InterPro:Jas | RefSeq:NP_566163.1 |
| InterPro:Ninja_fam | InterPro:Ninja_motif | ProteinID:OAP07088.1 | PFAM:PF07897 | PFAM:PF16135 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009015 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31413 | PANTHER:PTHR31413:SF10 | UniProt:Q9S7Z2 | Symbol:TMAC2 |
| UniParc:UPI00000A4B08 | SEG:seg | : | : | : | : |
Description
AFP4TMAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VMX2]
Coordinates
chr3:-:385237..387051
Molecular Weight (calculated)
35457.0 Da
IEP (calculated)
8.617
GRAVY (calculated)
-0.811
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMIRGRGIP NGVVQVPNLS ANNLLQKFFI ASNHFCQRDS EHGENQQEAK KREDEAEEDE KDVELTLGLS LNGQFGTDPR SRKRRHFELG RSSSIPEGFV
101: FDEQRSGGGN GGDMRRIVGR GGSDMFQLDR TRSLPVVTEM DIEKERKVSE KTRAFMESPV TNRGAYLTKD KNRGQAVETE KPRAFLEFKI PPTKEGKKEK
201: DRLVVTGPVN GKGKNGNTAK KQKNNVENSG MEKARNILED MPCVSTRDVG ADGKRVEGFL YWYGGNKEEV KIVCVCHGSF LSPAEFVRHG GGTVSDDDGG
301: DVMINPLRHI VVKLPSSSI
101: FDEQRSGGGN GGDMRRIVGR GGSDMFQLDR TRSLPVVTEM DIEKERKVSE KTRAFMESPV TNRGAYLTKD KNRGQAVETE KPRAFLEFKI PPTKEGKKEK
201: DRLVVTGPVN GKGKNGNTAK KQKNNVENSG MEKARNILED MPCVSTRDVG ADGKRVEGFL YWYGGNKEEV KIVCVCHGSF LSPAEFVRHG GGTVSDDDGG
301: DVMINPLRHI VVKLPSSSI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.