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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g058740.2.1
Solyc02g030600.1.1
Solyc02g030610.1.1
Solyc02g030620.1.1
Solyc02g030630.1.1
Solyc02g030650.1.1
Solyc02g032670.1.1
Solyc02g032680.1.1
Solyc02g032690.1.1
Solyc02g032710.1.1
Solyc02g032720.1.1
Solyc02g066840.1.1
Solyc02g066850.1.1
Solyc02g066860.1.1
Solyc02g066870.1.1
Solyc02g066890.1.1
Solyc02g066900.1.1
Solyc02g088910.2.1
Solyc04g005380.2.1
Solyc05g012210.2.1
Solyc09g009490.2.1
Solyc10g076920.1.1
Solyc10g081350.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G02140.1 Solyc04g005380.2.1 AT1G13740.1 18484180
AT3G02140.1 Solyc05g012210.2.1 AT1G13740.1 18484180
AT3G02140.1 Solyc04g005380.2.1 AT1G69260.1 18484180
AT3G02140.1 Solyc05g012210.2.1 AT1G69260.1 18484180
AT3G02140.1 Solyc01g058740.2.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030600.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030610.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030620.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030630.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030650.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032670.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032680.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032690.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032710.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032720.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066840.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066850.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066860.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066870.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066890.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066900.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g088910.2.1 AT3G02140.1 18484180
AT3G02140.1 Solyc09g009490.2.1 AT3G44460.1 18484180
AT3G02140.1 Solyc10g076920.1.1 AT3G56850.1 18484180
AT3G02140.1 Solyc10g081350.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc04g005380.2.1 AT1G13740.1 18484180
AT3G29575.1 Solyc05g012210.2.1 AT1G13740.1 18484180
AT3G29575.1 Solyc04g005380.2.1 AT1G69260.1 18484180
AT3G29575.1 Solyc05g012210.2.1 AT1G69260.1 18484180
AT3G29575.1 Solyc01g058740.2.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030600.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030610.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030620.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030630.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030650.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032670.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032680.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032690.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032710.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032720.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066840.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066850.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066860.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066870.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066890.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066900.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g088910.2.1 AT3G29575.1 18484180
AT3G29575.1 Solyc09g009490.2.1 AT3G44460.1 18484180
AT3G29575.1 Solyc10g076920.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc10g081350.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc10g076920.1.1 AT3G56850.1 21798944
AT3G29575.1 Solyc10g081350.1.1 AT3G56850.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g066850.1.1 Tomato cytosol 18.58 83.33
Solyc02g032690.1.1 Tomato cytosol 62.16 76.67
Solyc02g030630.1.1 Tomato cytosol 66.55 64.38
Solyc02g032670.1.1 Tomato cytosol 53.72 60.69
Solyc02g030650.1.1 Tomato nucleus 29.05 47.78
Solyc06g083290.1.1 Tomato cytosol, extracellular, plastid 10.47 45.59
GSMUA_Achr4P32830_001 Banana nucleus 17.23 37.5
Solyc02g032680.1.1 Tomato cytosol 14.19 35.0
Solyc02g066860.1.1 Tomato cytosol 14.53 33.08
Solyc02g032140.1.1 Tomato cytosol 13.85 33.06
AT3G29575.1 Thale cress nucleus 24.66 31.6
CDY00093 Canola nucleus 26.69 31.1
CDY19988 Canola nucleus 26.01 30.2
Bra036210.1-P Field mustard nucleus 26.01 30.2
HORVU4Hr1G035770.1 Barley plastid 11.15 29.73
CDX85274 Canola nucleus 26.01 29.06
Bra025400.1-P Field mustard nucleus 26.01 28.84
CDX86364 Canola nucleus 26.01 28.84
Solyc02g030610.1.1 Tomato cytosol 15.54 28.75
CDY44386 Canola nucleus 23.99 28.29
Solyc02g032710.1.1 Tomato cytosol 12.84 28.15
Solyc02g066870.1.1 Tomato cytosol 14.86 28.03
Solyc02g066900.1.1 Tomato cytosol 29.73 27.76
CDY04085 Canola nucleus 23.31 27.71
Solyc01g058740.2.1 Tomato cytosol 6.42 26.76
TraesCS3D01G532000.1 Wheat nucleus 14.86 25.88
Solyc02g066890.1.1 Tomato cytosol 30.74 25.35
Bra039157.1-P Field mustard cytosol 23.65 25.27
GSMUA_Achr9P09330_001 Banana nucleus 28.04 24.56
Solyc02g032720.1.1 Tomato cytosol 30.41 24.32
CDY68672 Canola cytosol, mitochondrion, nucleus, plastid 22.64 24.28
Solyc02g088910.2.1 Tomato nucleus 25.68 23.97
CDX91976 Canola mitochondrion 22.97 23.86
CDX74273 Canola mitochondrion 21.96 23.81
TraesCS4B01G246800.1 Wheat nucleus 19.26 23.55
Bra001031.1-P Field mustard mitochondrion 21.28 23.08
Bra033105.1-P Field mustard nucleus 16.89 22.94
GSMUA_Achr6P34980_001 Banana cytosol 21.62 22.61
KRH01286 Soybean nucleus 28.72 22.55
CDY43256 Canola mitochondrion 21.28 22.5
GSMUA_Achr5P01470_001 Banana nucleus 21.62 22.3
TraesCS3B01G594200.1 Wheat cytosol 16.55 21.68
KRH45047 Soybean nucleus 27.36 21.15
VIT_14s0068g00300.t01 Wine grape nucleus 27.36 20.93
TraesCS4D01G246100.2 Wheat nucleus 17.23 20.32
TraesCS4A01G058100.1 Wheat nucleus 15.88 19.11
AT3G02140.1 Thale cress cytosol 20.27 18.81
Solyc04g005380.2.1 Tomato nucleus 24.32 18.75
Os03t0214200-01 Rice nucleus 24.66 18.2
Zm00001d048085_P002 Maize nucleus 23.31 17.56
EER89528 Sorghum nucleus 20.95 17.37
TraesCS4B01G247000.1 Wheat nucleus 22.64 16.92
EER92642 Sorghum nucleus 22.3 16.75
TraesCS4D01G246400.1 Wheat nucleus 22.3 16.67
Solyc05g012210.2.1 Tomato extracellular, golgi 25.68 16.41
Solyc02g066840.1.1 Tomato cytosol 8.11 16.0
HORVU4Hr1G067930.1 Barley nucleus 21.28 15.59
TraesCS4A01G057800.1 Wheat cytosol, mitochondrion, nucleus, plastid 23.31 13.5
Solyc02g030600.1.1 Tomato cytosol 8.11 11.48
Protein Annotations
EnsemblPlants:Solyc02g030620.1.1EnsemblPlantsGene:Solyc02g030620.1GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009987
InterPro:JasInterPro:Ninja_famPANTHER:PTHR31413PANTHER:PTHR31413:SF10PFAM:PF16135SEG:seg
UniParc:UPI0002768DD2UniProt:K4B5B0MapMan:15.5.53.3:::
Description
No Description!
Coordinates
chr2:+:26509886..26510886
Molecular Weight (calculated)
33274.3 Da
IEP (calculated)
4.842
GRAVY (calculated)
-0.717
Length
296 amino acids
Sequence
(BLAST)
001: MEYWRQKNLL PPMETEMAWR RRMDAEMDWR RRMETEIECR RRMETEIECR RRMETEMEWR QISGPFSVTT AASMPPMETQ TEWGEMSDPF SVNRTASLPP
101: MEIGMGWKER RDLQTQTRGD TQQSRWDKLK NVIVVEENEG NGTSSLPSPG GSGSVGSFGS TGTSFETQQH LPNQIDGTFI EGASCSSNEI PPVSGTLEQM
201: QHLVLAAIEA TNEQSLDFSG KEGLRNFLLK MPGASTKGDG ANGKKTEGFL YAYNRGGEVK MVCICHGYFL TPAEFIKHAG GGDVENPLRL INVDPN
Best Arabidopsis Sequence Match ( AT3G29575.1 )
(BLAST)
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
Arabidopsis Description
AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.