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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003253.1-P
Bra004004.1-P
Bra004368.1-P
Bra007274.1-P
Bra007276.1-P
Bra014668.1-P
Bra019436.1-P
Bra019706.1-P
Bra025400.1-P
Bra026891.1-P
Bra033105.1-P
Bra036210.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G29575.1 Bra019706.1-P AT1G13740.1 18484180
AT3G29575.1 Bra026891.1-P AT1G13740.1 18484180
AT3G29575.1 Bra004004.1-P AT1G69260.1 18484180
AT3G29575.1 Bra004368.1-P AT1G69260.1 18484180
AT3G29575.1 Bra025400.1-P AT3G29575.1 18484180
AT3G29575.1 Bra033105.1-P AT3G29575.1 18484180
AT3G29575.1 Bra036210.1-P AT3G29575.1 18484180
AT3G29575.1 Bra019436.1-P AT3G44460.1 18484180
AT3G29575.1 Bra003253.1-P AT3G56850.1 18484180
AT3G29575.1 Bra007274.1-P AT3G56850.1 18484180
AT3G29575.1 Bra007276.1-P AT3G56850.1 18484180
AT3G29575.1 Bra014668.1-P AT3G56850.1 18484180
AT3G29575.1 Bra003253.1-P AT3G56850.1 21798944
AT3G29575.1 Bra007274.1-P AT3G56850.1 21798944
AT3G29575.1 Bra007276.1-P AT3G56850.1 21798944
AT3G29575.1 Bra014668.1-P AT3G56850.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY44386 Canola nucleus 99.08 86.06
CDY04085 Canola nucleus 93.12 81.53
Bra036210.1-P Field mustard nucleus 68.81 58.82
AT3G29575.1 Thale cress nucleus 61.47 58.01
Bra025400.1-P Field mustard nucleus 68.81 56.18
GSMUA_Achr4P32830_001 Banana nucleus 23.39 37.5
Solyc02g066850.1.1 Tomato cytosol 10.55 34.85
PGSC0003DMT400003712 Potato nucleus 47.71 33.12
Bra027018.1-P Field mustard cytosol 8.72 32.2
Solyc02g088910.2.1 Tomato nucleus 45.87 31.55
Bra026891.1-P Field mustard nucleus 41.28 29.13
VIT_14s0068g00300.t01 Wine grape nucleus 48.17 27.13
GSMUA_Achr9P09330_001 Banana nucleus 41.74 26.92
Bra004368.1-P Field mustard nucleus 39.91 26.69
Bra019706.1-P Field mustard nucleus 38.53 26.58
KRH45047 Soybean nucleus 46.33 26.37
Bra039157.1-P Field mustard cytosol 33.03 25.99
PGSC0003DMT400095238 Potato cytosol, mitochondrion 15.14 25.98
KRH01286 Soybean nucleus 44.5 25.73
Bra001031.1-P Field mustard mitochondrion 32.11 25.64
Solyc02g032710.1.1 Tomato cytosol 15.6 25.19
PGSC0003DMT400089614 Potato cytosol 15.6 25.0
Bra004004.1-P Field mustard nucleus 38.99 24.57
PGSC0003DMT400036544 Potato cytosol 14.22 24.41
Solyc02g066870.1.1 Tomato cytosol 16.97 23.57
GSMUA_Achr6P34980_001 Banana cytosol 30.28 23.32
GSMUA_Achr5P01470_001 Banana nucleus 30.28 23.0
Solyc01g058740.2.1 Tomato cytosol 7.34 22.54
Solyc02g030650.1.1 Tomato nucleus 17.89 21.67
Solyc02g032680.1.1 Tomato cytosol 11.93 21.67
Solyc02g032690.1.1 Tomato cytosol 22.94 20.83
Solyc02g030610.1.1 Tomato cytosol 14.68 20.0
Solyc02g066860.1.1 Tomato cytosol 11.47 19.23
HORVU4Hr1G035770.1 Barley plastid 9.63 18.92
EER89528 Sorghum nucleus 30.28 18.49
EER92642 Sorghum nucleus 33.03 18.27
Solyc02g030630.1.1 Tomato cytosol 25.23 17.97
Solyc02g032670.1.1 Tomato cytosol 21.56 17.94
Os03t0214200-01 Rice nucleus 32.57 17.71
Zm00001d048085_P002 Maize nucleus 31.65 17.56
TraesCS3B01G594200.1 Wheat cytosol 17.89 17.26
Bra001242.1-P Field mustard nucleus 22.48 17.01
Solyc02g030620.1.1 Tomato cytosol 22.94 16.89
Solyc02g066840.1.1 Tomato cytosol 11.47 16.67
TraesCS4A01G058100.1 Wheat nucleus 18.35 16.26
TraesCS3D01G532000.1 Wheat nucleus 12.39 15.88
TraesCS4B01G246800.1 Wheat nucleus 17.43 15.7
TraesCS4B01G247000.1 Wheat nucleus 28.44 15.66
TraesCS4D01G246400.1 Wheat nucleus 28.44 15.66
TraesCS4D01G246100.2 Wheat nucleus 17.43 15.14
HORVU4Hr1G067930.1 Barley nucleus 27.52 14.85
Bra040367.1-P Field mustard nucleus 18.81 14.7
Solyc02g066890.1.1 Tomato cytosol 23.39 14.21
Solyc02g066900.1.1 Tomato cytosol 19.72 13.56
TraesCS4A01G057800.1 Wheat cytosol, mitochondrion, nucleus, plastid 29.36 12.52
Solyc02g030600.1.1 Tomato cytosol 11.93 12.44
Solyc02g032720.1.1 Tomato cytosol 20.18 11.89
PGSC0003DMT400036545 Potato nucleus 24.77 11.04
Protein Annotations
EnsemblPlants:Bra033105.1EnsemblPlants:Bra033105.1-PEnsemblPlantsGene:Bra033105GO:GO:0007154GO:GO:0007165GO:GO:0008150
GO:GO:0009987InterPro:NINJA_BInterPro:Ninja_famInterPro:Ninja_motifncoils:CoilPANTHER:PTHR31413
PANTHER:PTHR31413:SF6PFAM:PF07897PFAM:PF16136SEG:segUniParc:UPI0002546E3EUniProt:M4EWC1
MapMan:15.5.53.3:::::
Description
AT3G29575 (E=1e-050) AFP3 | AFP3 (ABI FIVE BINDING PROTEIN 3)
Coordinates
chrA02:+:21385528..21386296
Molecular Weight (calculated)
24377.1 Da
IEP (calculated)
10.162
GRAVY (calculated)
-0.795
Length
218 amino acids
Sequence
(BLAST)
001: MSEAEKRANG EIYRNIPRRD LLQSFMSKKQ KLSVQEGEVE IELDLGLSLN GRFGVDPLAN KRLLVRSPSI PDFVVNDVRS ELSRTFSLPV ETEELLRKRK
101: ELQSLRRLEA KRKRSEKQRN ARDQKHKADK IVEEGSSGSG SSGLSELDNA PPPPVQATTN KSKETSPSSA QSLPAARNII EDMPCVSTTG EGPNGKKIDG
201: FLYRYMKGQE VRIVCVPR
Best Arabidopsis Sequence Match ( AT3G29575.3 )
(BLAST)
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
Arabidopsis Description
AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.