Factsheet for Bra036210.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003253.1-P
Bra004004.1-P
Bra004368.1-P
Bra007274.1-P
Bra007276.1-P
Bra014668.1-P
Bra019436.1-P
Bra019706.1-P
Bra025400.1-P
Bra026891.1-P
Bra033105.1-P
Bra036210.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G29575.1	Bra019706.1-P	AT1G13740.1	18484180
AT3G29575.1	Bra026891.1-P	AT1G13740.1	18484180
AT3G29575.1	Bra004004.1-P	AT1G69260.1	18484180
AT3G29575.1	Bra004368.1-P	AT1G69260.1	18484180
AT3G29575.1	Bra025400.1-P	AT3G29575.1	18484180
AT3G29575.1	Bra033105.1-P	AT3G29575.1	18484180
AT3G29575.1	Bra036210.1-P	AT3G29575.1	18484180
AT3G29575.1	Bra019436.1-P	AT3G44460.1	18484180
AT3G29575.1	Bra003253.1-P	AT3G56850.1	18484180
AT3G29575.1	Bra007274.1-P	AT3G56850.1	18484180
AT3G29575.1	Bra007276.1-P	AT3G56850.1	18484180
AT3G29575.1	Bra014668.1-P	AT3G56850.1	18484180
AT3G29575.1	Bra003253.1-P	AT3G56850.1	21798944
AT3G29575.1	Bra007274.1-P	AT3G56850.1	21798944
AT3G29575.1	Bra007276.1-P	AT3G56850.1	21798944
AT3G29575.1	Bra014668.1-P	AT3G56850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19988	Canola	nucleus	100.0	100.0
Bra025400.1-P	Field mustard	nucleus	77.65	74.16
AT3G29575.1	Thale cress	nucleus	65.49	72.29
Bra033105.1-P	Field mustard	nucleus	58.82	68.81
Solyc02g066850.1.1	Tomato	cytosol	16.86	65.15
GSMUA_Achr4P32830_001	Banana	nucleus	30.59	57.35
Bra027018.1-P	Field mustard	cytosol	12.16	52.54
PGSC0003DMT400003712	Potato	nucleus	52.16	42.36
Solyc02g088910.2.1	Tomato	nucleus	51.37	41.32
PGSC0003DMT400036544	Potato	cytosol	19.61	39.37
Bra026891.1-P	Field mustard	nucleus	47.06	38.84
HORVU4Hr1G035770.1	Barley	plastid	16.86	38.74
Solyc02g032680.1.1	Tomato	cytosol	18.04	38.33
GSMUA_Achr9P09330_001	Banana	nucleus	49.41	37.28
Solyc02g032710.1.1	Tomato	cytosol	19.22	36.3
VIT_14s0068g00300.t01	Wine grape	nucleus	54.9	36.18
PGSC0003DMT400089614	Potato	cytosol	19.22	36.03
Bra019706.1-P	Field mustard	nucleus	44.31	35.76
KRH01286	Soybean	nucleus	52.55	35.54
GSMUA_Achr6P34980_001	Banana	cytosol	39.22	35.34
GSMUA_Achr5P01470_001	Banana	nucleus	39.61	35.19
KRH45047	Soybean	nucleus	52.16	34.73
PGSC0003DMT400095238	Potato	cytosol, mitochondrion	17.25	34.65
Bra004368.1-P	Field mustard	nucleus	43.92	34.36
Bra004004.1-P	Field mustard	nucleus	45.88	33.81
Solyc02g066870.1.1	Tomato	cytosol	20.78	33.76
Bra001031.1-P	Field mustard	mitochondrion	36.08	33.7
Bra039157.1-P	Field mustard	cytosol	36.47	33.57
Solyc02g066860.1.1	Tomato	cytosol	16.86	33.08
Solyc02g032690.1.1	Tomato	cytosol	30.2	32.08
TraesCS3B01G594200.1	Wheat	cytosol	27.84	31.42
Solyc02g030610.1.1	Tomato	cytosol	19.61	31.25
Solyc02g030650.1.1	Tomato	nucleus	21.96	31.11
TraesCS3D01G532000.1	Wheat	nucleus	20.0	30.0
Solyc02g032670.1.1	Tomato	cytosol	30.2	29.39
Os03t0214200-01	Rice	nucleus	41.96	26.68
Solyc02g030630.1.1	Tomato	cytosol	31.76	26.47
TraesCS4B01G246800.1	Wheat	nucleus	25.1	26.45
EER89528	Sorghum	nucleus	36.47	26.05
TraesCS4A01G058100.1	Wheat	nucleus	25.1	26.02
Solyc02g030620.1.1	Tomato	cytosol	30.2	26.01
EER92642	Sorghum	nucleus	39.61	25.63
Bra001242.1-P	Field mustard	nucleus	28.63	25.35
TraesCS4D01G246100.2	Wheat	nucleus	23.92	24.3
Zm00001d048085_P002	Maize	nucleus	37.25	24.17
Solyc01g058740.2.1	Tomato	cytosol	6.67	23.94
TraesCS4B01G247000.1	Wheat	nucleus	36.47	23.48
HORVU4Hr1G067930.1	Barley	nucleus	36.86	23.27
TraesCS4D01G246400.1	Wheat	nucleus	36.08	23.23
Bra040367.1-P	Field mustard	nucleus	24.71	22.58
Solyc02g066900.1.1	Tomato	cytosol	27.45	22.08
Solyc02g066890.1.1	Tomato	cytosol	29.41	20.89
Solyc02g066840.1.1	Tomato	cytosol	12.16	20.67
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	37.65	18.79
Solyc02g032720.1.1	Tomato	cytosol	26.67	18.38
PGSC0003DMT400036545	Potato	nucleus	30.98	16.16
Solyc02g030600.1.1	Tomato	cytosol	11.76	14.35

Protein Annotations

EnsemblPlants:Bra036210.1	EnsemblPlants:Bra036210.1-P	EnsemblPlantsGene:Bra036210	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Jas	InterPro:NINJA_B	InterPro:Ninja_fam	InterPro:Ninja_motif	ncoils:Coil
PANTHER:PTHR31413	PANTHER:PTHR31413:SF6	PFAM:PF07897	PFAM:PF16135	PFAM:PF16136	SEG:seg
UniParc:UPI0002541DE9	UniProt:M4F554	MapMan:15.5.53.3	:	:	:

Description

AT3G29575 (E=1e-073) AFP3 | AFP3 (ABI FIVE BINDING PROTEIN 3)

Coordinates

chrA09:-:2159098..2160266

Molecular Weight (calculated)

27871.2 Da

IEP (calculated)

9.798

GRAVY (calculated)

-0.675

Length

255 amino acids

Sequence
(BLAST)

001: MSGAEKRDNG EEIPRDLLQR FMSKKQKSSV EAGEVEIELD LGLSLNGRFG VDPLAKTRLL TRSSSIPDLV VNGGRTELSR TCSLPVETEE WRKRKELQSL
101: RRLEAKRKRL EKQRNVRVLR EKHKAGGGGG EEGSIGSSGS GSSGLSELDT SPSPPVQATT KASIERSPSS TQPLPENQAA RNMIDDMPCV STTGDGPNGR
201: KIDGFLYRYR KGDEVRIVCV CHGSFLTPAE FVKHAGGRDV AHPLKHIVVN PSPFL

Best Arabidopsis Sequence Match ( AT3G29575.3 )
(BLAST)

001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L

Arabidopsis Description

AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.