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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g058740.2.1
Solyc02g030600.1.1
Solyc02g030610.1.1
Solyc02g030620.1.1
Solyc02g030630.1.1
Solyc02g030650.1.1
Solyc02g032670.1.1
Solyc02g032680.1.1
Solyc02g032690.1.1
Solyc02g032710.1.1
Solyc02g032720.1.1
Solyc02g066840.1.1
Solyc02g066850.1.1
Solyc02g066860.1.1
Solyc02g066870.1.1
Solyc02g066890.1.1
Solyc02g066900.1.1
Solyc02g088910.2.1
Solyc04g005380.2.1
Solyc05g012210.2.1
Solyc09g009490.2.1
Solyc10g076920.1.1
Solyc10g081350.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G02140.1 Solyc04g005380.2.1 AT1G13740.1 18484180
AT3G02140.1 Solyc05g012210.2.1 AT1G13740.1 18484180
AT3G02140.1 Solyc04g005380.2.1 AT1G69260.1 18484180
AT3G02140.1 Solyc05g012210.2.1 AT1G69260.1 18484180
AT3G02140.1 Solyc01g058740.2.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030600.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030610.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030620.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030630.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030650.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032670.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032680.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032690.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032710.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032720.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066840.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066850.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066860.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066870.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066890.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066900.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g088910.2.1 AT3G02140.1 18484180
AT3G02140.1 Solyc09g009490.2.1 AT3G44460.1 18484180
AT3G02140.1 Solyc10g076920.1.1 AT3G56850.1 18484180
AT3G02140.1 Solyc10g081350.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc04g005380.2.1 AT1G13740.1 18484180
AT3G29575.1 Solyc05g012210.2.1 AT1G13740.1 18484180
AT3G29575.1 Solyc04g005380.2.1 AT1G69260.1 18484180
AT3G29575.1 Solyc05g012210.2.1 AT1G69260.1 18484180
AT3G29575.1 Solyc01g058740.2.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030600.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030610.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030620.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030630.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030650.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032670.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032680.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032690.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032710.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032720.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066840.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066850.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066860.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066870.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066890.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066900.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g088910.2.1 AT3G29575.1 18484180
AT3G29575.1 Solyc09g009490.2.1 AT3G44460.1 18484180
AT3G29575.1 Solyc10g076920.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc10g081350.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc10g076920.1.1 AT3G56850.1 21798944
AT3G29575.1 Solyc10g081350.1.1 AT3G56850.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g066850.1.1 Tomato cytosol 24.17 87.88
Solyc02g030630.1.1 Tomato cytosol 81.25 63.73
Solyc02g030620.1.1 Tomato cytosol 76.67 62.16
Solyc02g030650.1.1 Tomato nucleus 37.5 50.0
Solyc06g083290.1.1 Tomato cytosol, extracellular, plastid 14.17 50.0
Solyc02g032670.1.1 Tomato cytosol 52.08 47.71
GSMUA_Achr4P32830_001 Banana nucleus 22.92 40.44
Solyc02g032680.1.1 Tomato cytosol 19.58 39.17
Solyc02g066860.1.1 Tomato cytosol 19.58 36.15
HORVU4Hr1G035770.1 Barley plastid 15.83 34.23
AT3G29575.1 Thale cress nucleus 31.67 32.9
Solyc02g032140.1.1 Tomato cytosol 16.25 31.45
Solyc02g032710.1.1 Tomato cytosol 17.5 31.11
CDY00093 Canola nucleus 32.92 31.1
CDY19988 Canola nucleus 32.08 30.2
Bra036210.1-P Field mustard nucleus 32.08 30.2
Solyc02g066870.1.1 Tomato cytosol 19.58 29.94
Solyc02g030610.1.1 Tomato cytosol 19.58 29.38
CDX85274 Canola nucleus 32.08 29.06
CDX86364 Canola nucleus 32.08 28.84
Bra025400.1-P Field mustard nucleus 32.08 28.84
CDY44386 Canola nucleus 30.0 28.69
CDY04085 Canola nucleus 29.17 28.11
Solyc02g066900.1.1 Tomato cytosol 37.08 28.08
Solyc01g058740.2.1 Tomato cytosol 7.92 26.76
TraesCS3D01G532000.1 Wheat nucleus 18.33 25.88
Solyc02g088910.2.1 Tomato nucleus 32.5 24.61
Solyc02g066890.1.1 Tomato cytosol 36.25 24.23
Bra039157.1-P Field mustard cytosol 27.92 24.19
CDX74273 Canola mitochondrion 27.5 24.18
GSMUA_Achr9P09330_001 Banana nucleus 33.75 23.96
CDX91976 Canola mitochondrion 28.33 23.86
Bra001031.1-P Field mustard mitochondrion 26.67 23.44
CDY68672 Canola cytosol, mitochondrion, nucleus, plastid 26.67 23.19
Bra033105.1-P Field mustard nucleus 20.83 22.94
KRH01286 Soybean nucleus 35.83 22.81
CDY43256 Canola mitochondrion 25.42 21.79
TraesCS4B01G246800.1 Wheat nucleus 21.67 21.49
GSMUA_Achr6P34980_001 Banana cytosol 25.0 21.2
KRH45047 Soybean nucleus 33.75 21.15
TraesCS4D01G246100.2 Wheat nucleus 22.08 21.12
Solyc02g032720.1.1 Tomato cytosol 32.5 21.08
VIT_14s0068g00300.t01 Wine grape nucleus 33.75 20.93
GSMUA_Achr5P01470_001 Banana nucleus 24.58 20.56
TraesCS3B01G594200.1 Wheat cytosol 18.75 19.91
AT3G02140.1 Thale cress cytosol 25.0 18.81
Solyc04g005380.2.1 Tomato nucleus 29.58 18.49
Os03t0214200-01 Rice nucleus 30.0 17.96
EER89528 Sorghum nucleus 26.67 17.93
TraesCS4A01G058100.1 Wheat nucleus 17.92 17.48
Solyc02g066840.1.1 Tomato cytosol 10.83 17.33
Zm00001d048085_P002 Maize nucleus 27.92 17.05
EER92642 Sorghum nucleus 27.92 17.01
TraesCS4D01G246400.1 Wheat nucleus 25.42 15.4
Solyc05g012210.2.1 Tomato extracellular, golgi 29.58 15.33
TraesCS4B01G247000.1 Wheat nucleus 25.0 15.15
HORVU4Hr1G067930.1 Barley nucleus 25.42 15.1
TraesCS4A01G057800.1 Wheat cytosol, mitochondrion, nucleus, plastid 25.83 12.13
Solyc02g030600.1.1 Tomato cytosol 10.42 11.96
Protein Annotations
EnsemblPlants:Solyc02g032690.1.1EnsemblPlantsGene:Solyc02g032690.1GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009987
InterPro:JasInterPro:Ninja_famPANTHER:PTHR31413PANTHER:PTHR31413:SF10PFAM:PF16135SEG:seg
UniParc:UPI000276755DUniProt:K4B5L3MapMan:15.5.53.3:::
Description
No Description!
Coordinates
chr2:-:28985746..28986580
Molecular Weight (calculated)
25867.4 Da
IEP (calculated)
5.344
GRAVY (calculated)
-0.613
Length
240 amino acids
Sequence
(BLAST)
001: MEWRQINGPS SVMRTASMPP METQTEWGKM KDPFSVNRTA LLPPMETGMN WKDRRDLQTQ TRGDTQQNRW DKLNNVIVVE ENEGNGTSSL PSPGGSGSVG
101: SFGSAGTSSE TQQHLPNQVD GTFIEGASGS SNAIPPVSGT LEQMQHLVLA AIEATNEQSP DFSGKEGPRN FLLKMPGVAT KGDGPNGKKT EGFLYAYKRG
201: GDVKIVCICH GYFLTPAEFV KHAGGGDVEN PLRLITVDPN
Best Arabidopsis Sequence Match ( AT1G13740.1 )
(BLAST)
001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
Arabidopsis Description
AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.