CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94206
KRG94991
KRH01286
KRH22688
KRH26633
KRH37750
KRH45047
KRH57716
KRH64894
KRH70923
KRH75067

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02140.1	KRH70923	AT1G13740.1	18484180
AT3G02140.1	KRH75067	AT1G13740.1	18484180
AT3G02140.1	KRH70923	AT1G69260.1	18484180
AT3G02140.1	KRH75067	AT1G69260.1	18484180
AT3G02140.1	KRH01286	AT3G02140.1	18484180
AT3G02140.1	KRH45047	AT3G02140.1	18484180
AT3G02140.1	KRH22688	AT3G44460.1	18484180
AT3G02140.1	KRH26633	AT3G44460.1	18484180
AT3G02140.1	KRH37750	AT3G44460.1	18484180
AT3G02140.1	KRG94206	AT3G56850.1	18484180
AT3G02140.1	KRG94991	AT3G56850.1	18484180
AT3G02140.1	KRH57716	AT3G56850.1	18484180
AT3G02140.1	KRH64894	AT3G56850.1	18484180
AT3G29575.1	KRH70923	AT1G13740.1	18484180
AT3G29575.1	KRH75067	AT1G13740.1	18484180
AT3G29575.1	KRH70923	AT1G69260.1	18484180
AT3G29575.1	KRH75067	AT1G69260.1	18484180
AT3G29575.1	KRH01286	AT3G29575.1	18484180
AT3G29575.1	KRH45047	AT3G29575.1	18484180
AT3G29575.1	KRH22688	AT3G44460.1	18484180
AT3G29575.1	KRH26633	AT3G44460.1	18484180
AT3G29575.1	KRH37750	AT3G44460.1	18484180
AT3G29575.1	KRG94206	AT3G56850.1	18484180
AT3G29575.1	KRG94991	AT3G56850.1	18484180
AT3G29575.1	KRH57716	AT3G56850.1	18484180
AT3G29575.1	KRH64894	AT3G56850.1	18484180
AT3G29575.1	KRG94206	AT3G56850.1	21798944
AT3G29575.1	KRG94991	AT3G56850.1	21798944
AT3G29575.1	KRH57716	AT3G56850.1	21798944
AT3G29575.1	KRH64894	AT3G56850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01286	Soybean	nucleus	75.2	76.39
Solyc02g066850.1.1	Tomato	cytosol	11.75	68.18
GSMUA_Achr4P32830_001	Banana	nucleus	19.58	55.15
AT3G29575.1	Thale cress	nucleus	32.11	53.25
CDY00093	Canola	nucleus	34.99	52.76
Bra036210.1-P	Field mustard	nucleus	34.73	52.16
CDY19988	Canola	nucleus	34.73	52.16
CDY44386	Canola	nucleus	33.42	51.0
CDY04085	Canola	nucleus	32.64	50.2
CDX85274	Canola	nucleus	33.94	49.06
Bra025400.1-P	Field mustard	nucleus	33.94	48.69
CDX86364	Canola	nucleus	33.94	48.69
Bra033105.1-P	Field mustard	nucleus	26.37	46.33
Solyc02g088910.2.1	Tomato	nucleus	36.03	43.53
PGSC0003DMT400003712	Potato	nucleus	35.25	42.99
PGSC0003DMT400036544	Potato	cytosol	13.84	41.73
Solyc02g032680.1.1	Tomato	cytosol	12.01	38.33
HORVU4Hr1G035770.1	Barley	plastid	10.97	37.84
VIT_14s0068g00300.t01	Wine grape	nucleus	36.81	36.43
GSMUA_Achr9P09330_001	Banana	nucleus	31.59	35.8
CDX74273	Canola	mitochondrion	25.33	35.53
Solyc02g066860.1.1	Tomato	cytosol	12.01	35.38
PGSC0003DMT400089614	Potato	cytosol	12.53	35.29
Solyc02g032710.1.1	Tomato	cytosol	12.27	34.81
Bra001031.1-P	Field mustard	mitochondrion	24.8	34.8
Solyc02g030650.1.1	Tomato	nucleus	16.19	34.44
Solyc02g032690.1.1	Tomato	cytosol	21.15	33.75
GSMUA_Achr5P01470_001	Banana	nucleus	25.07	33.45
GSMUA_Achr6P34980_001	Banana	cytosol	24.54	33.22
PGSC0003DMT400095238	Potato	cytosol, mitochondrion	10.97	33.07
KRH70923	Soybean	nucleus	34.99	32.6
Bra039157.1-P	Field mustard	cytosol	23.5	32.49
Solyc02g066870.1.1	Tomato	cytosol	13.32	32.48
CDY68672	Canola	cytosol, mitochondrion, nucleus, plastid	23.24	32.25
KRH75067	Soybean	nucleus	34.2	32.19
TraesCS3D01G532000.1	Wheat	nucleus	14.1	31.76
CDX91976	Canola	mitochondrion	23.24	31.23
Solyc02g032670.1.1	Tomato	cytosol	20.89	30.53
CDY43256	Canola	mitochondrion	22.19	30.36
Os03t0214200-01	Rice	nucleus	31.33	29.93
TraesCS3B01G594200.1	Wheat	cytosol	17.49	29.65
Solyc02g030610.1.1	Tomato	cytosol	12.27	29.38
KRH54707	Soybean	nucleus	18.28	28.11
Solyc02g030620.1.1	Tomato	cytosol	21.15	27.36
KRH63223	Soybean	nucleus	18.54	27.31
EER89528	Sorghum	nucleus	25.33	27.17
Solyc02g030630.1.1	Tomato	cytosol	21.67	27.12
AT3G02140.1	Thale cress	cytosol	22.19	26.65
TraesCS4B01G246800.1	Wheat	nucleus	16.45	26.03
Solyc01g058740.2.1	Tomato	cytosol	4.7	25.35
EER92642	Sorghum	nucleus	25.85	25.13
TraesCS4B01G247000.1	Wheat	nucleus	25.59	24.75
Solyc02g066900.1.1	Tomato	cytosol	20.37	24.61
TraesCS4D01G246400.1	Wheat	nucleus	25.33	24.49
Zm00001d048085_P002	Maize	nucleus	25.07	24.43
TraesCS4A01G058100.1	Wheat	nucleus	15.67	24.39
TraesCS4D01G246100.2	Wheat	nucleus	15.93	24.3
Solyc02g066890.1.1	Tomato	cytosol	22.19	23.68
KRH03141	Soybean	nucleus	13.84	22.55
HORVU4Hr1G067930.1	Barley	nucleus	23.24	22.03
KRH56804	Soybean	nucleus	16.19	21.99
KRH66123	Soybean	nucleus	19.58	21.19
KRH07456	Soybean	nucleus	19.32	21.14
Solyc02g032720.1.1	Tomato	cytosol	20.1	20.81
Solyc02g066840.1.1	Tomato	cytosol	8.09	20.67
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	26.37	19.77
PGSC0003DMT400036545	Potato	nucleus	24.02	18.81
Solyc02g030600.1.1	Tomato	cytosol	8.36	15.31

Protein Annotations

EntrezGene:100820446	MapMan:15.5.53.3	EMBL:ACUP02004984	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G246400	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	UniProt:I1KWF4	InterPro:Jas	EnsemblPlants:KRH45047
ProteinID:KRH45047	ProteinID:KRH45047.1	InterPro:NINJA_B	InterPro:Ninja_fam	InterPro:Ninja_motif	PFAM:PF07897
PFAM:PF16135	PFAM:PF16136	PANTHER:PTHR31413	PANTHER:PTHR31413:SF6	UniParc:UPI0002337E0E	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:21311847..21315861

Molecular Weight (calculated)

41707.2 Da

IEP (calculated)

8.806

GRAVY (calculated)

-0.715

Length

383 amino acids

Sequence
(BLAST)

001: MAEVEDRDNN TRHHHHYISS TTTTQSPMNN FPRDLLRTFM GVNNNNNNNN NSNNNNHHNL PMPVVKLEEE LELSLDLSMN GRFGVDPTAK KIKRTTSIPE
101: FASDKEMGFA TVGCTGSLVR TCSLPTETEE EWRKRKELQT LRRMEARRKR SEKQRNMKAL REQQQRVVGV VGSQGSNPVD QGAGEYGEVA VAPPLARTVS
201: LTTRVCGLGL NGDSEKEKKS GIVLPPPSPS QGSIGSSGIS EAESQQGQGT TPMDVRSPTS ANLLPDSELK SPAGVAENNT GKNAAAAVVT MRSQSNKHSP
301: PQSRTKDIVR NLLEDMPCVS TKGEGPNGKR IEGFLYRYGK GEEVRIVCVC HGSFLTPSEF VKHAGGGDVA NPLKHIVVSP SLL

Best Arabidopsis Sequence Match ( AT1G13740.1 )
(BLAST)

001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF

Arabidopsis Description

AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.