Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g088910.2.1 | Tomato | nucleus | 81.53 | 80.76 |
| AT3G29575.1 | Thale cress | nucleus | 40.13 | 54.55 |
| CDX85274 | Canola | nucleus | 44.59 | 52.83 |
| Bra025400.1-P | Field mustard | nucleus | 44.9 | 52.81 |
| CDX86364 | Canola | nucleus | 44.9 | 52.81 |
| CDY04085 | Canola | nucleus | 41.72 | 52.61 |
| CDY44386 | Canola | nucleus | 42.04 | 52.59 |
| Bra036210.1-P | Field mustard | nucleus | 42.36 | 52.16 |
| CDY19988 | Canola | nucleus | 42.36 | 52.16 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 22.29 | 51.47 |
| CDY00093 | Canola | nucleus | 41.08 | 50.79 |
| Bra033105.1-P | Field mustard | nucleus | 33.12 | 47.71 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 43.31 | 40.24 |
| PGSC0003DMT400036544 | Potato | cytosol | 15.92 | 39.37 |
| HORVU4Hr1G035770.1 | Barley | plastid | 13.06 | 36.94 |
| PGSC0003DMT400089614 | Potato | cytosol | 15.92 | 36.76 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 44.9 | 36.43 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 14.65 | 36.22 |
| KRH45047 | Soybean | nucleus | 42.99 | 35.25 |
| KRH01286 | Soybean | nucleus | 41.72 | 34.75 |
| CDX74273 | Canola | mitochondrion | 29.94 | 34.43 |
| PGSC0003DMT400045906 | Potato | nucleus | 41.4 | 33.51 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 30.57 | 33.45 |
| CDX91976 | Canola | mitochondrion | 30.25 | 33.33 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 28.98 | 32.97 |
| Bra001031.1-P | Field mustard | mitochondrion | 28.66 | 32.97 |
| Bra039157.1-P | Field mustard | cytosol | 28.66 | 32.49 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 28.66 | 31.8 |
| CDY43256 | Canola | mitochondrion | 27.71 | 31.07 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 22.29 | 30.97 |
| PGSC0003DMT400072760 | Potato | nucleus | 40.13 | 30.66 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 16.24 | 30.0 |
| AT3G02140.1 | Thale cress | cytosol | 28.98 | 28.53 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 21.66 | 28.1 |
| Os03t0214200-01 | Rice | nucleus | 35.67 | 27.93 |
| EER89528 | Sorghum | nucleus | 29.94 | 26.33 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 20.06 | 25.61 |
| EER92642 | Sorghum | nucleus | 31.85 | 25.38 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 31.85 | 24.75 |
| Zm00001d048085_P002 | Maize | nucleus | 29.94 | 23.92 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 19.11 | 23.9 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 29.3 | 23.23 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 28.98 | 22.98 |
| PGSC0003DMT400051959 | Potato | nucleus | 18.15 | 22.18 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 30.89 | 18.98 |
| PGSC0003DMT400091590 | Potato | cytosol | 21.34 | 16.42 |
| PGSC0003DMT400036545 | Potato | nucleus | 25.48 | 16.36 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400003712 | EnsemblPlantsGene:PGSC0003DMG400001460 | EntrezGene:102584110 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | ncoils:Coil |
| PANTHER:PTHR31413 | PANTHER:PTHR31413:SF6 | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | PGSC:PGSC0003DMG400001460 |
| RefSeq:XP_006338361.1 | SEG:seg | UniParc:UPI00029609A4 | UniProt:M0ZM68 | MapMan:15.5.53.3 | : |
Description
Ninja-family protein Os03g0419100 [Source:PGSC_GENE;Acc:PGSC0003DMG400001460]
Coordinates
chr2:+:45556630..45560606
Molecular Weight (calculated)
34457.9 Da
IEP (calculated)
8.570
GRAVY (calculated)
-0.773
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEAEENREK RCFSSMQMDI FSRDLLHKFM NGNNNKFHEI PNEEDDLELS LGLSLNGRFG VDPERAKRLK RSSSISNFVF SGGDESNGRC SFSVGPITRT
101: CSLPVEGEEE CRKRKELQSL RRLEAKRKRM EKLQNVRVVK DKVDLDERPE ENGGPGGNSL PVSQGSMASQ GSGSSGISDF GSQPIQGPGD NSTGANTPAS
201: IKPSEHERKQ VAKPPKITSE KPASTCNGNA SKEAKEMFKN YMLNMPCVST MGNGPNGKKI EGFLYRYQKG EEVKIMCVCH GNFLSPAEFV KHAGGGDVAN
301: PLKQIVVNPS PLLR
101: CSLPVEGEEE CRKRKELQSL RRLEAKRKRM EKLQNVRVVK DKVDLDERPE ENGGPGGNSL PVSQGSMASQ GSGSSGISDF GSQPIQGPGD NSTGANTPAS
201: IKPSEHERKQ VAKPPKITSE KPASTCNGNA SKEAKEMFKN YMLNMPCVST MGNGPNGKKI EGFLYRYQKG EEVKIMCVCH GNFLSPAEFV KHAGGGDVAN
301: PLKQIVVNPS PLLR
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
Arabidopsis Description
AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.