Factsheet for PGSC0003DMT400091590

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g032140.1.1	Tomato	cytosol	15.93	52.42
PGSC0003DMT400036544	Potato	cytosol	11.03	35.43
GSMUA_Achr4P32830_001	Banana	nucleus	10.54	31.62
HORVU4Hr1G035770.1	Barley	plastid	8.09	29.73
KRH54707	Soybean	nucleus	14.71	24.1
PGSC0003DMT400095238	Potato	cytosol, mitochondrion	7.35	23.62
PGSC0003DMT400089614	Potato	cytosol	7.6	22.79
TraesCS3D01G532000.1	Wheat	nucleus	9.07	21.76
TraesCS3B01G594200.1	Wheat	cytosol	12.01	21.68
KRH63223	Soybean	nucleus	13.73	21.54
PGSC0003DMT400003712	Potato	nucleus	16.42	21.34
KRH03141	Soybean	nucleus	12.25	21.28
KRH56804	Soybean	nucleus	14.46	20.92
GSMUA_Achr5P01470_001	Banana	nucleus	13.97	19.86
TraesCS4A01G058100.1	Wheat	nucleus	11.76	19.51
TraesCS4B01G246800.1	Wheat	nucleus	11.52	19.42
GSMUA_Achr6P34980_001	Banana	cytosol	12.5	18.02
PGSC0003DMT400072760	Potato	nucleus	18.14	18.0
Os03t0214200-01	Rice	nucleus	17.16	17.46
PGSC0003DMT400045906	Potato	nucleus	16.42	17.27
GSMUA_Achr9P09330_001	Banana	nucleus	14.22	17.16
TraesCS4D01G246100.2	Wheat	nucleus	10.54	17.13
TraesCS4B01G247000.1	Wheat	nucleus	15.69	16.16
TraesCS4D01G246400.1	Wheat	nucleus	15.69	16.16
EER92642	Sorghum	nucleus	15.44	15.99
PGSC0003DMT400051959	Potato	nucleus	10.05	15.95
EER89528	Sorghum	nucleus	13.73	15.69
Zm00001d048085_P002	Maize	nucleus	14.95	15.52
HORVU4Hr1G067930.1	Barley	nucleus	13.73	13.86
VIT_17s0000g05280.t01	Wine grape	nucleus	13.97	13.35
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	15.69	12.52
PGSC0003DMT400036545	Potato	nucleus	13.73	11.45

Protein Annotations

EnsemblPlants:PGSC0003DMT400091590	EnsemblPlantsGene:PGSC0003DMG400041161	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
InterPro:Jas	InterPro:Ninja_fam	PANTHER:PTHR31413	PANTHER:PTHR31413:SF10	PFAM:PF16135	PGSC:PGSC0003DMG400041161
UniParc:UPI0002959E1E	UniProt:M1DMZ0	MapMan:15.5.53.3	:	:	:

Description

Ninja-family protein AFP2 [Source:PGSC_GENE;Acc:PGSC0003DMG400041161]

Coordinates

chr2:+:15849269..15850495

Molecular Weight (calculated)

44697.3 Da

IEP (calculated)

10.215

GRAVY (calculated)

-0.748

Length

408 amino acids

Sequence
(BLAST)

001: MRKRVKVDSL TRKPWRKAIE KALKKVKNSD EVLDKGKSIV LPESNGEKAL KKVKNSDEVL DKGKSIVLPE SNGEKALKKV KNSDEVLDKG KSIVLPESNG
101: EKALKKVKNS DEVLDKDKSI ELPKSSGEKP LKKVKNYDEV LDKSKSIVLP ESNGEKPLKK VKNSDEVLDK GKSIVLPESN GEKPLKKVKN SDEVLDKGKS
201: IVLPESNGEK PLKKVKNSDE VLDKGKSIVL PESNGEKPLK KVKNSDEVLD KGKSIVLPES NGEKPLKKVK NSDEVLDKGK SIVLPESNGE KPLKKVKNSD
301: EVLDKGKSIV LSKSNGEKSL KKVKNSDNIV TLMNASELLR IMPCVTTSGG IINGKLTEGI LYSGGQEKQI SILCICHGRF FTTAEFVKHG GGKEVDNPMK
401: FIKVVDDA

Best Arabidopsis Sequence Match ( AT1G13740.1 )
(BLAST)

001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF

Arabidopsis Description

AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.