Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4B01G246800.1 | Wheat | nucleus | 65.34 | 67.77 |
TraesCS4A01G058100.1 | Wheat | nucleus | 65.74 | 67.07 |
Solyc02g066850.1.1 | Tomato | cytosol | 14.34 | 54.55 |
HORVU4Hr1G035770.1 | Barley | plastid | 21.91 | 49.55 |
Bra027018.1-P | Field mustard | cytosol | 11.55 | 49.15 |
Solyc06g083290.1.1 | Tomato | cytosol, extracellular, plastid | 11.95 | 44.12 |
TraesCS3D01G532000.1 | Wheat | nucleus | 24.7 | 36.47 |
PGSC0003DMT400036544 | Potato | cytosol | 15.94 | 31.5 |
PGSC0003DMT400089614 | Potato | cytosol | 16.73 | 30.88 |
Solyc02g032680.1.1 | Tomato | cytosol | 13.55 | 28.33 |
Solyc02g032710.1.1 | Tomato | cytosol | 14.74 | 27.41 |
Solyc02g066860.1.1 | Tomato | cytosol | 13.94 | 26.92 |
Solyc02g032140.1.1 | Tomato | cytosol | 13.15 | 26.61 |
AT3G29575.1 | Thale cress | nucleus | 24.3 | 26.41 |
CDY44386 | Canola | nucleus | 24.3 | 24.3 |
CDY04085 | Canola | nucleus | 23.9 | 24.1 |
CDY00093 | Canola | nucleus | 24.3 | 24.02 |
Bra036210.1-P | Field mustard | nucleus | 24.3 | 23.92 |
CDY19988 | Canola | nucleus | 24.3 | 23.92 |
PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 11.95 | 23.62 |
Solyc02g066870.1.1 | Tomato | cytosol | 14.74 | 23.57 |
Solyc02g030610.1.1 | Tomato | cytosol | 14.74 | 23.12 |
Solyc02g032690.1.1 | Tomato | cytosol | 21.12 | 22.08 |
KRH63223 | Soybean | nucleus | 22.71 | 21.92 |
GSMUA_Achr3P30390_001 | Banana | nucleus | 28.69 | 21.75 |
Solyc02g030650.1.1 | Tomato | nucleus | 15.54 | 21.67 |
CDX86364 | Canola | nucleus | 22.71 | 21.35 |
Bra025400.1-P | Field mustard | nucleus | 22.71 | 21.35 |
EER89528 | Sorghum | nucleus | 30.28 | 21.29 |
KRH54707 | Soybean | nucleus | 21.12 | 21.29 |
CDY36406 | Canola | nucleus | 24.7 | 21.23 |
TraesCS4D01G246400.1 | Wheat | nucleus | 33.47 | 21.21 |
CDX85274 | Canola | nucleus | 22.31 | 21.13 |
CDY43256 | Canola | mitochondrion | 23.11 | 20.71 |
Bra026891.1-P | Field mustard | nucleus | 25.5 | 20.71 |
CDY33807 | Canola | nucleus | 25.5 | 20.71 |
CDY16104 | Canola | nucleus | 25.5 | 20.71 |
TraesCS2D01G183700.1 | Wheat | nucleus | 25.1 | 20.32 |
CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 22.31 | 20.29 |
Bra019706.1-P | Field mustard | nucleus | 25.5 | 20.25 |
Bra039157.1-P | Field mustard | cytosol | 22.31 | 20.22 |
CDX74273 | Canola | mitochondrion | 21.91 | 20.15 |
GSMUA_Achr7P26660_001 | Banana | nucleus | 28.29 | 20.11 |
CDX98125 | Canola | nucleus | 25.5 | 20.06 |
CDX91976 | Canola | mitochondrion | 22.71 | 20.0 |
Bra004004.1-P | Field mustard | nucleus | 27.49 | 19.94 |
CDY07354 | Canola | nucleus | 27.49 | 19.88 |
Solyc02g032670.1.1 | Tomato | cytosol | 20.72 | 19.85 |
AT1G13740.1 | Thale cress | nucleus | 27.09 | 19.54 |
Os03t0214200-01 | Rice | nucleus | 31.08 | 19.45 |
AT3G02140.1 | Thale cress | cytosol | 24.7 | 19.44 |
PGSC0003DMT400003712 | Potato | nucleus | 23.9 | 19.11 |
GSMUA_Achr4P14370_001 | Banana | nucleus | 25.5 | 19.1 |
CDY04272 | Canola | nucleus | 26.29 | 19.08 |
Bra001031.1-P | Field mustard | mitochondrion | 20.72 | 19.05 |
AT3G07255.1 | Thale cress | nucleus | 21.91 | 18.77 |
Solyc02g088910.2.1 | Tomato | nucleus | 23.51 | 18.61 |
Zm00001d048085_P002 | Maize | nucleus | 29.08 | 18.58 |
KRH56804 | Soybean | nucleus | 20.72 | 18.44 |
VIT_01s0011g00410.t01 | Wine grape | nucleus | 26.29 | 18.33 |
Solyc02g030630.1.1 | Tomato | cytosol | 22.31 | 18.3 |
Solyc04g005380.2.1 | Tomato | nucleus | 27.89 | 18.23 |
PGSC0003DMT400045906 | Potato | nucleus | 27.89 | 18.04 |
GSMUA_Achr6P27430_001 | Banana | nucleus | 25.5 | 18.03 |
KRH03141 | Soybean | nucleus | 16.73 | 17.87 |
GSMUA_Achr3P15940_001 | Banana | nucleus | 24.7 | 17.77 |
KRH70923 | Soybean | nucleus | 28.69 | 17.52 |
Bra033105.1-P | Field mustard | nucleus | 15.14 | 17.43 |
Bra001242.1-P | Field mustard | nucleus | 19.92 | 17.36 |
CDX74054 | Canola | nucleus | 19.92 | 17.36 |
Solyc02g030620.1.1 | Tomato | cytosol | 20.32 | 17.23 |
AT1G69260.1 | Thale cress | nucleus | 23.51 | 17.1 |
CDY08008 | Canola | cytosol | 19.52 | 17.07 |
KRH01286 | Soybean | nucleus | 25.5 | 16.98 |
Solyc01g058740.2.1 | Tomato | cytosol | 4.78 | 16.9 |
Bra004368.1-P | Field mustard | nucleus | 21.51 | 16.56 |
CDX95951 | Canola | nucleus | 21.91 | 16.37 |
PGSC0003DMT400051959 | Potato | nucleus | 16.73 | 16.34 |
CDY40905 | Canola | nucleus | 22.71 | 16.33 |
VIT_14s0068g00300.t01 | Wine grape | nucleus | 25.1 | 16.28 |
EER92642 | Sorghum | nucleus | 25.5 | 16.24 |
KRH75067 | Soybean | nucleus | 26.29 | 16.22 |
CDY34910 | Canola | peroxisome | 17.93 | 16.13 |
KRH45047 | Soybean | nucleus | 24.3 | 15.93 |
Solyc02g066900.1.1 | Tomato | cytosol | 19.92 | 15.77 |
Bra040367.1-P | Field mustard | nucleus | 17.53 | 15.77 |
KRH07456 | Soybean | nucleus | 21.51 | 15.43 |
PGSC0003DMT400072760 | Potato | nucleus | 25.1 | 15.33 |
Solyc02g066890.1.1 | Tomato | cytosol | 21.51 | 15.04 |
KRH66123 | Soybean | nucleus | 20.72 | 14.69 |
VIT_00s0216g00060.t01 | Wine grape | nucleus | 19.92 | 13.97 |
Solyc05g012210.2.1 | Tomato | extracellular, golgi | 25.5 | 13.82 |
GSMUA_Achr9P07070_001 | Banana | mitochondrion | 22.31 | 13.15 |
VIT_17s0000g05280.t01 | Wine grape | nucleus | 22.31 | 13.11 |
Solyc02g032720.1.1 | Tomato | cytosol | 19.12 | 12.97 |
Solyc02g066840.1.1 | Tomato | cytosol | 6.37 | 10.67 |
PGSC0003DMT400036545 | Potato | nucleus | 20.72 | 10.63 |
PGSC0003DMT400091590 | Potato | cytosol | 17.13 | 10.54 |
Solyc02g030600.1.1 | Tomato | cytosol | 5.58 | 6.7 |
Protein Annotations
EnsemblPlants:TraesCS4D01G246100.2 | EnsemblPlantsGene:TraesCS4D01G246100 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
InterPro:Jas | InterPro:Ninja_fam | InterPro:Ninja_motif | PANTHER:PTHR31413 | PFAM:PF07897 | PFAM:PF16135 |
SEG:seg | MapMan:15.5.53.3 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:414614140..414623470
Molecular Weight (calculated)
26138.2 Da
IEP (calculated)
7.562
GRAVY (calculated)
-0.118
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAYSKDMPR GVGGGDDGEK KVRRSESGTE EVDLTLELSL GGRLGAKRRR VEGLAGSSSV AVAPPAPVGT NSSQGAGFPP HGVAVEPSAL LRATLNPFLG
101: SACAAEVQPS ATPLRSIKME PVEGTPRAEG RSLSSAVVPW SEGTNGVMAT ASSLAVAVMM AATLGSRGEQ QGASERHAAL AREMPLVWTS GLHNGMRTVG
201: FLYQYSRVDE LRIMCVCHGS FLTPAEFVEH AGGGQVANPL RSIIVKTPSW L
101: SACAAEVQPS ATPLRSIKME PVEGTPRAEG RSLSSAVVPW SEGTNGVMAT ASSLAVAVMM AATLGSRGEQ QGASERHAAL AREMPLVWTS GLHNGMRTVG
201: FLYQYSRVDE LRIMCVCHGS FLTPAEFVEH AGGGQVANPL RSIIVKTPSW L
001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
Arabidopsis Description
AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.