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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g058740.2.1
Solyc02g030600.1.1
Solyc02g030610.1.1
Solyc02g030620.1.1
Solyc02g030630.1.1
Solyc02g030650.1.1
Solyc02g032670.1.1
Solyc02g032680.1.1
Solyc02g032690.1.1
Solyc02g032710.1.1
Solyc02g032720.1.1
Solyc02g066840.1.1
Solyc02g066850.1.1
Solyc02g066860.1.1
Solyc02g066870.1.1
Solyc02g066890.1.1
Solyc02g066900.1.1
Solyc02g088910.2.1
Solyc04g005380.2.1
Solyc05g012210.2.1
Solyc09g009490.2.1
Solyc10g076920.1.1
Solyc10g081350.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G02140.1 Solyc04g005380.2.1 AT1G13740.1 18484180
AT3G02140.1 Solyc05g012210.2.1 AT1G13740.1 18484180
AT3G02140.1 Solyc04g005380.2.1 AT1G69260.1 18484180
AT3G02140.1 Solyc05g012210.2.1 AT1G69260.1 18484180
AT3G02140.1 Solyc01g058740.2.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030600.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030610.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030620.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030630.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030650.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032670.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032680.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032690.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032710.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032720.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066840.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066850.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066860.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066870.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066890.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066900.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g088910.2.1 AT3G02140.1 18484180
AT3G02140.1 Solyc09g009490.2.1 AT3G44460.1 18484180
AT3G02140.1 Solyc10g076920.1.1 AT3G56850.1 18484180
AT3G02140.1 Solyc10g081350.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc04g005380.2.1 AT1G13740.1 18484180
AT3G29575.1 Solyc05g012210.2.1 AT1G13740.1 18484180
AT3G29575.1 Solyc04g005380.2.1 AT1G69260.1 18484180
AT3G29575.1 Solyc05g012210.2.1 AT1G69260.1 18484180
AT3G29575.1 Solyc01g058740.2.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030600.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030610.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030620.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030630.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030650.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032670.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032680.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032690.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032710.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032720.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066840.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066850.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066860.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066870.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066890.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066900.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g088910.2.1 AT3G29575.1 18484180
AT3G29575.1 Solyc09g009490.2.1 AT3G44460.1 18484180
AT3G29575.1 Solyc10g076920.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc10g081350.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc10g076920.1.1 AT3G56850.1 21798944
AT3G29575.1 Solyc10g081350.1.1 AT3G56850.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g066850.1.1 Tomato cytosol 18.95 87.88
Solyc02g032690.1.1 Tomato cytosol 63.73 81.25
Solyc02g030620.1.1 Tomato cytosol 64.38 66.55
Solyc02g030650.1.1 Tomato nucleus 29.09 49.44
Solyc06g083290.1.1 Tomato cytosol, extracellular, plastid 10.78 48.53
Solyc02g032670.1.1 Tomato cytosol 40.2 46.95
Solyc02g066840.1.1 Tomato cytosol 19.93 40.67
Solyc02g032710.1.1 Tomato cytosol 17.32 39.26
Solyc02g066900.1.1 Tomato cytosol 40.52 39.12
GSMUA_Achr4P32830_001 Banana nucleus 17.32 38.97
Solyc02g032680.1.1 Tomato cytosol 14.71 37.5
Solyc02g066870.1.1 Tomato cytosol 18.3 35.67
AT3G29575.1 Thale cress nucleus 26.14 34.63
Solyc02g066860.1.1 Tomato cytosol 14.71 34.62
Solyc02g066890.1.1 Tomato cytosol 40.52 34.54
CDY00093 Canola nucleus 27.12 32.68
CDY19988 Canola nucleus 26.47 31.76
Bra036210.1-P Field mustard nucleus 26.47 31.76
Solyc02g032140.1.1 Tomato cytosol 12.75 31.45
CDX85274 Canola nucleus 26.8 30.94
CDX86364 Canola nucleus 26.8 30.71
Bra025400.1-P Field mustard nucleus 26.8 30.71
CDY44386 Canola nucleus 24.84 30.28
CDY04085 Canola nucleus 24.51 30.12
Solyc02g030610.1.1 Tomato cytosol 15.69 30.0
HORVU4Hr1G035770.1 Barley plastid 10.78 29.73
Solyc02g030600.1.1 Tomato cytosol 19.28 28.23
CDX91976 Canola mitochondrion 26.14 28.07
CDX74273 Canola mitochondrion 24.51 27.47
Bra039157.1-P Field mustard cytosol 24.51 27.08
TraesCS3D01G532000.1 Wheat nucleus 15.03 27.06
Bra001031.1-P Field mustard mitochondrion 23.86 26.74
CDY68672 Canola cytosol, mitochondrion, nucleus, plastid 23.53 26.09
GSMUA_Achr9P09330_001 Banana nucleus 28.1 25.44
Solyc01g058740.2.1 Tomato cytosol 5.88 25.35
Solyc02g088910.2.1 Tomato nucleus 26.14 25.24
Bra033105.1-P Field mustard nucleus 17.97 25.23
CDY43256 Canola mitochondrion 22.22 24.29
KRH01286 Soybean nucleus 29.09 23.61
TraesCS4B01G246800.1 Wheat nucleus 18.3 23.14
GSMUA_Achr6P34980_001 Banana cytosol 20.91 22.61
TraesCS3B01G594200.1 Wheat cytosol 16.67 22.57
TraesCS4D01G246100.2 Wheat nucleus 18.3 22.31
Solyc02g032720.1.1 Tomato cytosol 26.8 22.16
GSMUA_Achr5P01470_001 Banana nucleus 20.59 21.95
KRH45047 Soybean nucleus 27.12 21.67
VIT_14s0068g00300.t01 Wine grape nucleus 27.12 21.45
AT3G02140.1 Thale cress cytosol 21.57 20.69
Solyc04g005380.2.1 Tomato nucleus 24.84 19.79
TraesCS4A01G058100.1 Wheat nucleus 15.69 19.51
Os03t0214200-01 Rice nucleus 25.49 19.45
EER92642 Sorghum nucleus 24.51 19.04
Zm00001d048085_P002 Maize nucleus 24.18 18.83
EER89528 Sorghum nucleus 21.9 18.77
TraesCS4D01G246400.1 Wheat nucleus 21.24 16.41
HORVU4Hr1G067930.1 Barley nucleus 21.57 16.34
Solyc05g012210.2.1 Tomato extracellular, golgi 24.51 16.2
TraesCS4B01G247000.1 Wheat nucleus 20.59 15.91
TraesCS4A01G057800.1 Wheat cytosol, mitochondrion, nucleus, plastid 21.57 12.92
Protein Annotations
EnsemblPlants:Solyc02g030630.1.1EnsemblPlantsGene:Solyc02g030630.1GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009987
InterPro:JasInterPro:Ninja_famPANTHER:PTHR31413PANTHER:PTHR31413:SF10PFAM:PF16135SEG:seg
UniParc:UPI0002768DD3UniProt:K4B5B1MapMan:15.5.53.3:::
Description
No Description!
Coordinates
chr2:+:26553128..26554220
Molecular Weight (calculated)
33937.0 Da
IEP (calculated)
4.843
GRAVY (calculated)
-0.702
Length
306 amino acids
Sequence
(BLAST)
001: MEKANHQDKG KRIVEDVSVD LTLGLPMDTQ MEYWRQRNYL PPMETEMAWR HRMETEIECR RRMETEMEWR QISGPFSVTT AASMPPMETQ TEWGEMSDPF
101: SVNRTASLSP METGMDWKER RGLQTQTRGD TQENRWDKLK NVIVVEENEG NGTSSLPSPG GSGSVGSFGS TGTSSETQPH LPNQIDGTFI EGASGSSNEI
201: PPVSGTLEQM QHLVLAAIEA TNEQSLDFSG KEGIRNFLIK MPGASTKGDG PNGKKTEGFL YAYKRGGEVK IVCICHGYFL TPAEFIKHAG GGDVENPLRL
301: IKVDPN
Best Arabidopsis Sequence Match ( AT1G13740.1 )
(BLAST)
001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
Arabidopsis Description
AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.