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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g058740.2.1
Solyc02g030600.1.1
Solyc02g030610.1.1
Solyc02g030620.1.1
Solyc02g030630.1.1
Solyc02g030650.1.1
Solyc02g032670.1.1
Solyc02g032680.1.1
Solyc02g032690.1.1
Solyc02g032710.1.1
Solyc02g032720.1.1
Solyc02g066840.1.1
Solyc02g066850.1.1
Solyc02g066860.1.1
Solyc02g066870.1.1
Solyc02g066890.1.1
Solyc02g066900.1.1
Solyc02g088910.2.1
Solyc04g005380.2.1
Solyc05g012210.2.1
Solyc09g009490.2.1
Solyc10g076920.1.1
Solyc10g081350.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G13740.1 Solyc04g005380.2.1 AT1G13740.1 18484180
AT1G13740.1 Solyc05g012210.2.1 AT1G13740.1 18484180
AT1G13740.1 Solyc04g005380.2.1 AT1G69260.1 18484180
AT1G13740.1 Solyc05g012210.2.1 AT1G69260.1 18484180
AT1G13740.1 Solyc01g058740.2.1 AT3G02140.1 18484180
AT1G13740.1 Solyc02g030600.1.1 AT3G02140.1 18484180
AT1G13740.1 Solyc02g030610.1.1 AT3G02140.1 18484180
AT1G13740.1 Solyc02g030620.1.1 AT3G02140.1 18484180
AT1G13740.1 Solyc02g030630.1.1 AT3G02140.1 18484180
AT1G13740.1 Solyc02g030650.1.1 AT3G02140.1 18484180
AT1G13740.1 Solyc02g032670.1.1 AT3G02140.1 18484180
AT1G13740.1 Solyc02g032680.1.1 AT3G02140.1 18484180
AT1G13740.1 Solyc02g032690.1.1 AT3G02140.1 18484180
AT1G13740.1 Solyc02g032710.1.1 AT3G02140.1 18484180
AT1G13740.1 Solyc02g032720.1.1 AT3G02140.1 18484180
AT1G13740.1 Solyc02g066840.1.1 AT3G02140.1 18484180
AT1G13740.1 Solyc02g066850.1.1 AT3G02140.1 18484180
AT1G13740.1 Solyc02g066860.1.1 AT3G02140.1 18484180
AT1G13740.1 Solyc02g066870.1.1 AT3G02140.1 18484180
AT1G13740.1 Solyc02g066890.1.1 AT3G02140.1 18484180
AT1G13740.1 Solyc02g066900.1.1 AT3G02140.1 18484180
AT1G13740.1 Solyc02g088910.2.1 AT3G02140.1 18484180
AT1G13740.1 Solyc01g058740.2.1 AT3G29575.1 18484180
AT1G13740.1 Solyc02g030600.1.1 AT3G29575.1 18484180
AT1G13740.1 Solyc02g030610.1.1 AT3G29575.1 18484180
AT1G13740.1 Solyc02g030620.1.1 AT3G29575.1 18484180
AT1G13740.1 Solyc02g030630.1.1 AT3G29575.1 18484180
AT1G13740.1 Solyc02g030650.1.1 AT3G29575.1 18484180
AT1G13740.1 Solyc02g032670.1.1 AT3G29575.1 18484180
AT1G13740.1 Solyc02g032680.1.1 AT3G29575.1 18484180
AT1G13740.1 Solyc02g032690.1.1 AT3G29575.1 18484180
AT1G13740.1 Solyc02g032710.1.1 AT3G29575.1 18484180
AT1G13740.1 Solyc02g032720.1.1 AT3G29575.1 18484180
AT1G13740.1 Solyc02g066840.1.1 AT3G29575.1 18484180
AT1G13740.1 Solyc02g066850.1.1 AT3G29575.1 18484180
AT1G13740.1 Solyc02g066860.1.1 AT3G29575.1 18484180
AT1G13740.1 Solyc02g066870.1.1 AT3G29575.1 18484180
AT1G13740.1 Solyc02g066890.1.1 AT3G29575.1 18484180
AT1G13740.1 Solyc02g066900.1.1 AT3G29575.1 18484180
AT1G13740.1 Solyc02g088910.2.1 AT3G29575.1 18484180
AT1G13740.1 Solyc09g009490.2.1 AT3G44460.1 18484180
AT1G13740.1 Solyc10g076920.1.1 AT3G56850.1 18484180
AT1G13740.1 Solyc10g081350.1.1 AT3G56850.1 18484180
AT1G69260.1 Solyc04g005380.2.1 AT1G13740.1 18484180
AT1G69260.1 Solyc05g012210.2.1 AT1G13740.1 18484180
AT1G69260.1 Solyc01g058740.2.1 AT3G02140.1 18484180
AT1G69260.1 Solyc02g030600.1.1 AT3G02140.1 18484180
AT1G69260.1 Solyc02g030610.1.1 AT3G02140.1 18484180
AT1G69260.1 Solyc02g030620.1.1 AT3G02140.1 18484180
AT1G69260.1 Solyc02g030630.1.1 AT3G02140.1 18484180
AT1G69260.1 Solyc02g030650.1.1 AT3G02140.1 18484180
AT1G69260.1 Solyc02g032670.1.1 AT3G02140.1 18484180
AT1G69260.1 Solyc02g032680.1.1 AT3G02140.1 18484180
AT1G69260.1 Solyc02g032690.1.1 AT3G02140.1 18484180
AT1G69260.1 Solyc02g032710.1.1 AT3G02140.1 18484180
AT1G69260.1 Solyc02g032720.1.1 AT3G02140.1 18484180
AT1G69260.1 Solyc02g066840.1.1 AT3G02140.1 18484180
AT1G69260.1 Solyc02g066850.1.1 AT3G02140.1 18484180
AT1G69260.1 Solyc02g066860.1.1 AT3G02140.1 18484180
AT1G69260.1 Solyc02g066870.1.1 AT3G02140.1 18484180
AT1G69260.1 Solyc02g066890.1.1 AT3G02140.1 18484180
AT1G69260.1 Solyc02g066900.1.1 AT3G02140.1 18484180
AT1G69260.1 Solyc02g088910.2.1 AT3G02140.1 18484180
AT1G69260.1 Solyc01g058740.2.1 AT3G29575.1 18484180
AT1G69260.1 Solyc02g030600.1.1 AT3G29575.1 18484180
AT1G69260.1 Solyc02g030610.1.1 AT3G29575.1 18484180
AT1G69260.1 Solyc02g030620.1.1 AT3G29575.1 18484180
AT1G69260.1 Solyc02g030630.1.1 AT3G29575.1 18484180
AT1G69260.1 Solyc02g030650.1.1 AT3G29575.1 18484180
AT1G69260.1 Solyc02g032670.1.1 AT3G29575.1 18484180
AT1G69260.1 Solyc02g032680.1.1 AT3G29575.1 18484180
AT1G69260.1 Solyc02g032690.1.1 AT3G29575.1 18484180
AT1G69260.1 Solyc02g032710.1.1 AT3G29575.1 18484180
AT1G69260.1 Solyc02g032720.1.1 AT3G29575.1 18484180
AT1G69260.1 Solyc02g066840.1.1 AT3G29575.1 18484180
AT1G69260.1 Solyc02g066850.1.1 AT3G29575.1 18484180
AT1G69260.1 Solyc02g066860.1.1 AT3G29575.1 18484180
AT1G69260.1 Solyc02g066870.1.1 AT3G29575.1 18484180
AT1G69260.1 Solyc02g066890.1.1 AT3G29575.1 18484180
AT1G69260.1 Solyc02g066900.1.1 AT3G29575.1 18484180
AT1G69260.1 Solyc02g088910.2.1 AT3G29575.1 18484180
AT1G69260.1 Solyc09g009490.2.1 AT3G44460.1 18484180
AT1G69260.1 Solyc10g076920.1.1 AT3G56850.1 18484180
AT1G69260.1 Solyc10g081350.1.1 AT3G56850.1 18484180
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400045906 Potato nucleus 73.96 73.2
Solyc02g066850.1.1 Tomato cytosol 9.64 56.06
Solyc06g083290.1.1 Tomato cytosol, extracellular, plastid 9.9 55.88
GSMUA_Achr4P32830_001 Banana nucleus 18.49 52.21
VIT_01s0011g00410.t01 Wine grape nucleus 41.93 44.72
Bra026891.1-P Field mustard nucleus 33.59 41.75
CDY33807 Canola nucleus 33.59 41.75
CDY16104 Canola nucleus 33.33 41.42
Solyc02g088910.2.1 Tomato nucleus 34.11 41.32
Solyc02g032680.1.1 Tomato cytosol 12.5 40.0
CDY36406 Canola nucleus 29.69 39.04
AT1G69260.1 Thale cress nucleus 34.9 38.84
Bra004368.1-P Field mustard nucleus 32.81 38.65
Bra019706.1-P Field mustard nucleus 31.51 38.29
CDX98125 Canola nucleus 31.51 37.93
CDY04272 Canola nucleus 33.85 37.57
Bra004004.1-P Field mustard nucleus 33.85 37.57
CDX95951 Canola nucleus 32.55 37.2
CDY07354 Canola nucleus 33.59 37.18
AT1G13740.1 Thale cress nucleus 33.33 36.78
GSMUA_Achr9P09330_001 Banana nucleus 32.29 36.69
HORVU4Hr1G035770.1 Barley plastid 10.42 36.04
Solyc02g032710.1.1 Tomato cytosol 12.5 35.56
Solyc02g066860.1.1 Tomato cytosol 11.72 34.62
KRH75067 Soybean nucleus 36.46 34.4
KRH70923 Soybean nucleus 36.46 34.06
GSMUA_Achr5P01470_001 Banana nucleus 25.26 33.8
Solyc02g066870.1.1 Tomato cytosol 13.8 33.76
Solyc05g012210.2.1 Tomato extracellular, golgi 40.1 33.26
CDY40905 Canola nucleus 29.95 32.95
GSMUA_Achr6P34980_001 Banana cytosol 23.96 32.51
Solyc02g030610.1.1 Tomato cytosol 13.28 31.88
TraesCS3D01G532000.1 Wheat nucleus 13.8 31.18
Solyc02g030650.1.1 Tomato nucleus 14.32 30.56
Solyc02g032690.1.1 Tomato cytosol 18.49 29.58
Solyc02g032140.1.1 Tomato cytosol 9.38 29.03
TraesCS4B01G246800.1 Wheat nucleus 18.23 28.93
TraesCS4A01G058100.1 Wheat nucleus 17.97 28.05
TraesCS4D01G246100.2 Wheat nucleus 18.23 27.89
Os03t0214200-01 Rice nucleus 28.91 27.68
TraesCS3B01G594200.1 Wheat cytosol 16.15 27.43
EER92642 Sorghum nucleus 27.6 26.9
Solyc02g032670.1.1 Tomato cytosol 18.23 26.72
EER89528 Sorghum nucleus 24.74 26.61
Zm00001d048085_P002 Maize nucleus 26.3 25.7
Solyc02g030630.1.1 Tomato cytosol 19.79 24.84
TraesCS4B01G247000.1 Wheat nucleus 25.26 24.49
Solyc02g030620.1.1 Tomato cytosol 18.75 24.32
HORVU4Hr1G067930.1 Barley nucleus 25.52 24.26
TraesCS4D01G246400.1 Wheat nucleus 25.0 24.24
Solyc01g058740.2.1 Tomato cytosol 4.43 23.94
Solyc02g066890.1.1 Tomato cytosol 19.53 20.89
Solyc02g066900.1.1 Tomato cytosol 16.93 20.5
TraesCS4A01G057800.1 Wheat cytosol, mitochondrion, nucleus, plastid 26.3 19.77
Solyc02g032720.1.1 Tomato cytosol 19.01 19.73
Solyc02g066840.1.1 Tomato cytosol 7.55 19.33
Solyc02g030600.1.1 Tomato cytosol 7.81 14.35
Protein Annotations
EnsemblPlants:Solyc04g005380.2.1EnsemblPlantsGene:Solyc04g005380.2GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009987
InterPro:JasInterPro:NINJA_BInterPro:Ninja_famInterPro:Ninja_motifncoils:CoilPANTHER:PTHR31413
PANTHER:PTHR31413:SF6PFAM:PF07897PFAM:PF16135PFAM:PF16136SEG:segUniParc:UPI00027661CD
UniProt:K4BNE4MapMan:15.5.53.3::::
Description
No Description!
Coordinates
chr4:+:272481..276895
Molecular Weight (calculated)
42225.9 Da
IEP (calculated)
7.983
GRAVY (calculated)
-0.674
Length
384 amino acids
Sequence
(BLAST)
001: MQKDVERVEF DSSFLVYGGF TMGDADEWRR RRSRVEMENL SLDTSRDLLQ RFMGISEKSE LEIVEDINED ELNLGLSLGG RFGVDKSSSN LLVRSSSIAA
101: CLPTVRDDDA VAVSSSLSQS VSCNPSLVRT SSLPVETELE WRKRKELQSL RRMEAKRRRS EKVQRNLRGE KCMEDENRGT DQMNLRGGNN NNNKKKLEKE
201: QFLATARKFG CKLPTLAALG ADDMAMAKGK ESYLQEKKKP ASQGSMESQG GCSSSISELE SKPAQGSADA SPSSIQSLHK DLGSRTLGGE VETSPSNTTR
301: SRVQESEAKA LGDMPCVFAK GDGPNGRRID GILYKYGKGE EIRIMCVCHG SFLSPAEFVK HAGGSDIANP LKHIVIKPNP SSFP
Best Arabidopsis Sequence Match ( AT1G69260.1 )
(BLAST)
001: MAEANERSKE MARSNSCVFP RDLLQRFISN SVEGEDDDEE EDDDEIELNL GLSLGGRFGV DKSNKLVRSS SVVVTMPLFR EDHHHHQAAA MITTKVSTET
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
Arabidopsis Description
AFP1Ninja-family protein AFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ98]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.