Factsheet for Bra019706.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001031.1-P
Bra003253.1-P
Bra004004.1-P
Bra004368.1-P
Bra007274.1-P
Bra007276.1-P
Bra014668.1-P
Bra019436.1-P
Bra019706.1-P
Bra025400.1-P
Bra026891.1-P
Bra033105.1-P
Bra036210.1-P
Bra039157.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13740.1	Bra019706.1-P	AT1G13740.1	18484180
AT1G13740.1	Bra026891.1-P	AT1G13740.1	18484180
AT1G13740.1	Bra004004.1-P	AT1G69260.1	18484180
AT1G13740.1	Bra004368.1-P	AT1G69260.1	18484180
AT1G13740.1	Bra001031.1-P	AT3G02140.1	18484180
AT1G13740.1	Bra039157.1-P	AT3G02140.1	18484180
AT1G13740.1	Bra025400.1-P	AT3G29575.1	18484180
AT1G13740.1	Bra033105.1-P	AT3G29575.1	18484180
AT1G13740.1	Bra036210.1-P	AT3G29575.1	18484180
AT1G13740.1	Bra019436.1-P	AT3G44460.1	18484180
AT1G13740.1	Bra003253.1-P	AT3G56850.1	18484180
AT1G13740.1	Bra007274.1-P	AT3G56850.1	18484180
AT1G13740.1	Bra007276.1-P	AT3G56850.1	18484180
AT1G13740.1	Bra014668.1-P	AT3G56850.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98125	Canola	nucleus	98.1	97.18
Bra026891.1-P	Field mustard	nucleus	60.44	61.81
AT1G13740.1	Thale cress	nucleus	63.29	57.47
Bra027018.1-P	Field mustard	cytosol	8.86	47.46
GSMUA_Achr4P32830_001	Banana	nucleus	20.25	47.06
Bra036210.1-P	Field mustard	nucleus	35.76	44.31
Bra025400.1-P	Field mustard	nucleus	36.08	42.7
Bra033105.1-P	Field mustard	nucleus	26.58	38.53
Bra004004.1-P	Field mustard	nucleus	41.14	37.57
Bra004368.1-P	Field mustard	nucleus	38.29	37.12
VIT_01s0011g00410.t01	Wine grape	nucleus	41.14	36.11
HORVU4Hr1G035770.1	Barley	plastid	12.34	35.14
GSMUA_Achr9P09330_001	Banana	nucleus	37.03	34.62
KRH70923	Soybean	nucleus	43.99	33.82
KRH75067	Soybean	nucleus	43.04	33.42
PGSC0003DMT400045906	Potato	nucleus	39.87	32.47
Solyc04g005380.2.1	Tomato	nucleus	38.29	31.51
PGSC0003DMT400072760	Potato	nucleus	40.82	31.39
GSMUA_Achr5P01470_001	Banana	nucleus	28.48	31.36
GSMUA_Achr6P34980_001	Banana	cytosol	27.22	30.39
Bra001031.1-P	Field mustard	mitochondrion	25.63	29.67
TraesCS3D01G532000.1	Wheat	nucleus	15.82	29.41
Bra039157.1-P	Field mustard	cytosol	25.0	28.52
TraesCS3B01G594200.1	Wheat	cytosol	19.94	27.88
Os03t0214200-01	Rice	nucleus	34.49	27.18
EER92642	Sorghum	nucleus	33.86	27.16
EER89528	Sorghum	nucleus	30.06	26.61
Solyc05g012210.2.1	Tomato	extracellular, golgi	38.61	26.35
Zm00001d048085_P002	Maize	nucleus	31.96	25.7
TraesCS4B01G246800.1	Wheat	nucleus	19.62	25.62
TraesCS4D01G246100.2	Wheat	nucleus	20.25	25.5
TraesCS4A01G058100.1	Wheat	nucleus	19.62	25.2
Bra040367.1-P	Field mustard	nucleus	21.2	24.01
TraesCS4D01G246400.1	Wheat	nucleus	30.06	23.99
TraesCS4B01G247000.1	Wheat	nucleus	29.43	23.48
HORVU4Hr1G067930.1	Barley	nucleus	28.48	22.28
Bra001242.1-P	Field mustard	nucleus	19.62	21.53
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	30.06	18.59

Protein Annotations

EnsemblPlants:Bra019706.1	EnsemblPlants:Bra019706.1-P	EnsemblPlantsGene:Bra019706	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Jas	InterPro:NINJA_B	InterPro:Ninja_fam	InterPro:Ninja_motif	ncoils:Coil
PANTHER:PTHR31413	PANTHER:PTHR31413:SF6	PFAM:PF07897	PFAM:PF16135	PFAM:PF16136	SEG:seg
UniParc:UPI000253EDF3	UniProt:M4DT63	MapMan:15.5.53.3	:	:	:

Description

AT1G13740 (E=5e-050) AFP2 | AFP2 (ABI FIVE BINDING PROTEIN 2)

Coordinates

chrA06:+:4876375..4877393

Molecular Weight (calculated)

34313.9 Da

IEP (calculated)

8.290

GRAVY (calculated)

-0.854

Length

316 amino acids

Sequence
(BLAST)

001: MGEEASRQQQ RTWNNNRDMT LTTNLSLDIN KHPTDLSENG GETSDCEDHE LSLGLSLGGR FGVDKTPRKL KRSSSVLGAV LPFVSEPENN YAVGLARTTS
101: LPAEIEEEWR KRKEMQSARR MEAKKRRCEK QSFRGGDEQT SSFESERWVT ASKSGFLQRH LVSSVDSDGA RGGGGGSSSS LSELDNKNQQ QGSSNSCGAV
201: TSPKIMTRCS SNNSGTEKHK GNEKGEDDGK GKGKGTVPTS TGLFDMPCVF TKGDGPNGRR VDGILYKYGK VGEEVRIMCI CHGSFLTPAE FVKHGGGGDV
301: DRPLRHIVVN TSPSTF

Best Arabidopsis Sequence Match ( AT1G13740.1 )
(BLAST)

001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF

Arabidopsis Description

AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.