Factsheet for Bra004004.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001031.1-P
Bra003253.1-P
Bra007274.1-P
Bra007276.1-P
Bra014668.1-P
Bra019436.1-P
Bra019706.1-P
Bra025400.1-P
Bra026891.1-P
Bra033105.1-P
Bra036210.1-P
Bra039157.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69260.1	Bra019706.1-P	AT1G13740.1	18484180
AT1G69260.1	Bra026891.1-P	AT1G13740.1	18484180
AT1G69260.1	Bra001031.1-P	AT3G02140.1	18484180
AT1G69260.1	Bra039157.1-P	AT3G02140.1	18484180
AT1G69260.1	Bra025400.1-P	AT3G29575.1	18484180
AT1G69260.1	Bra033105.1-P	AT3G29575.1	18484180
AT1G69260.1	Bra036210.1-P	AT3G29575.1	18484180
AT1G69260.1	Bra019436.1-P	AT3G44460.1	18484180
AT1G69260.1	Bra003253.1-P	AT3G56850.1	18484180
AT1G69260.1	Bra007274.1-P	AT3G56850.1	18484180
AT1G69260.1	Bra007276.1-P	AT3G56850.1	18484180
AT1G69260.1	Bra014668.1-P	AT3G56850.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07354	Canola	nucleus	99.13	98.85
AT1G69260.1	Thale cress	nucleus	62.14	62.32
Bra027018.1-P	Field mustard	cytosol	9.54	55.93
GSMUA_Achr4P32830_001	Banana	nucleus	19.08	48.53
Bra004368.1-P	Field mustard	nucleus	43.64	46.32
Bra036210.1-P	Field mustard	nucleus	33.81	45.88
Bra026891.1-P	Field mustard	nucleus	37.57	42.07
Bra025400.1-P	Field mustard	nucleus	32.37	41.95
Bra019706.1-P	Field mustard	nucleus	37.57	41.14
VIT_01s0011g00410.t01	Wine grape	nucleus	41.62	40.0
Bra033105.1-P	Field mustard	nucleus	24.57	38.99
GSMUA_Achr9P09330_001	Banana	nucleus	36.13	36.98
HORVU4Hr1G035770.1	Barley	plastid	11.85	36.94
PGSC0003DMT400072760	Potato	nucleus	42.49	35.77
PGSC0003DMT400045906	Potato	nucleus	39.88	35.57
KRH75067	Soybean	nucleus	41.04	34.89
KRH70923	Soybean	nucleus	41.33	34.79
Solyc04g005380.2.1	Tomato	nucleus	37.57	33.85
GSMUA_Achr5P01470_001	Banana	nucleus	27.17	32.75
GSMUA_Achr6P34980_001	Banana	cytosol	26.59	32.51
Bra001031.1-P	Field mustard	mitochondrion	24.28	30.77
Bra039157.1-P	Field mustard	cytosol	24.57	30.69
TraesCS3D01G532000.1	Wheat	nucleus	14.45	29.41
TraesCS4A01G058100.1	Wheat	nucleus	20.81	29.27
TraesCS4B01G246800.1	Wheat	nucleus	20.23	28.93
Solyc05g012210.2.1	Tomato	extracellular, golgi	38.44	28.73
Zm00001d048085_P002	Maize	nucleus	31.79	27.99
Os03t0214200-01	Rice	nucleus	32.08	27.68
TraesCS4D01G246100.2	Wheat	nucleus	19.94	27.49
EER92642	Sorghum	nucleus	31.21	27.41
EER89528	Sorghum	nucleus	27.46	26.61
TraesCS3B01G594200.1	Wheat	cytosol	17.34	26.55
TraesCS4D01G246400.1	Wheat	nucleus	30.06	26.26
TraesCS4B01G247000.1	Wheat	nucleus	29.48	25.76
HORVU4Hr1G067930.1	Barley	nucleus	30.06	25.74
Bra040367.1-P	Field mustard	nucleus	19.36	24.01
Bra001242.1-P	Field mustard	nucleus	19.36	23.26
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	30.92	20.94

Protein Annotations

EnsemblPlants:Bra004004.1	EnsemblPlants:Bra004004.1-P	EnsemblPlantsGene:Bra004004	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Jas	InterPro:NINJA_B	InterPro:Ninja_fam	InterPro:Ninja_motif	PANTHER:PTHR31413
PANTHER:PTHR31413:SF6	PFAM:PF07897	PFAM:PF16135	PFAM:PF16136	SEG:seg	UniParc:UPI000254197F
UniProt:M4CIH0	MapMan:15.5.53.3	:	:	:	:

Description

AT1G69260 (E=3e-084) AFP1 | AFP1 (ABI FIVE BINDING PROTEIN)

Coordinates

chrA07:-:16245645..16246916

Molecular Weight (calculated)

37388.6 Da

IEP (calculated)

9.291

GRAVY (calculated)

-0.832

Length

346 amino acids

Sequence
(BLAST)

001: MAEANKTSRE IARSNSCVFP RDLLQRFISN SAEGEDGGDQ EEEDDEEIEL NLGLSLGGRF GVDRSSKLVR SSSVVVTMPL FREPETTKPA ETSVAMARRT
101: GLTRTTSLPA ESEEEWRKRK EMQTLRRMAA KRRRSEKLRT GGGSSTKSTE ANNNPGEAAT TSRRRGRPSS GLPRWSATAA NSGGLLRQHS AGHESLHGSL
201: ESQGGGGGGG GVGSSSSVSE METKSNQASS EEARSLPTTQ QQQEAITRPN TTRLRRLSSV DMKIEPPQGK GKNEMPCVFT KGDGPNGKRV DGILYRYGNG
301: EEVRIMCVCH GDFLSPADFV KHAGGPHVDH PLRHIVVNTS SPSNLL

Best Arabidopsis Sequence Match ( AT1G69260.1 )
(BLAST)

001: MAEANERSKE MARSNSCVFP RDLLQRFISN SVEGEDDDEE EDDDEIELNL GLSLGGRFGV DKSNKLVRSS SVVVTMPLFR EDHHHHQAAA MITTKVSTET
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL

Arabidopsis Description

AFP1Ninja-family protein AFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.