Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004004.1-P | Field mustard | nucleus | 62.32 | 62.14 |
| CDY07354 | Canola | nucleus | 62.03 | 61.67 |
| CDY04272 | Canola | nucleus | 60.0 | 59.83 |
| Bra004368.1-P | Field mustard | nucleus | 47.54 | 50.31 |
| CDX95951 | Canola | nucleus | 47.83 | 49.11 |
| AT3G29575.1 | Thale cress | nucleus | 32.75 | 48.92 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 19.13 | 48.53 |
| CDY40905 | Canola | nucleus | 43.77 | 43.27 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 42.61 | 40.83 |
| AT1G13740.1 | Thale cress | nucleus | 39.71 | 39.37 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 35.65 | 36.39 |
| KRH75067 | Soybean | nucleus | 41.74 | 35.38 |
| PGSC0003DMT400045906 | Potato | nucleus | 39.71 | 35.31 |
| KRH70923 | Soybean | nucleus | 41.74 | 35.04 |
| Solyc04g005380.2.1 | Tomato | nucleus | 38.84 | 34.9 |
| PGSC0003DMT400072760 | Potato | nucleus | 40.87 | 34.31 |
| HORVU4Hr1G035770.1 | Barley | plastid | 11.01 | 34.23 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 27.83 | 33.45 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 25.22 | 30.74 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 40.0 | 29.81 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 13.91 | 28.24 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 19.13 | 27.27 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 17.39 | 26.55 |
| Os03t0214200-01 | Rice | nucleus | 30.72 | 26.43 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 18.84 | 26.42 |
| EER92642 | Sorghum | nucleus | 30.14 | 26.4 |
| Zm00001d048085_P002 | Maize | nucleus | 28.99 | 25.45 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 28.7 | 25.0 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 28.12 | 24.49 |
| AT3G02140.1 | Thale cress | cytosol | 22.61 | 24.45 |
| EER89528 | Sorghum | nucleus | 25.22 | 24.37 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 17.1 | 23.51 |
| AT3G07255.1 | Thale cress | nucleus | 19.13 | 22.53 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 26.09 | 22.28 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 28.99 | 19.57 |
Protein Annotations
| MapMan:15.5.53.3 | EntrezGene:843257 | ProteinID:AAF27062.1 | ProteinID:AAG52486.1 | ProteinID:AEE34903.1 | Symbol:AFP1 |
| ArrayExpress:AT1G69260 | EnsemblPlantsGene:AT1G69260 | RefSeq:AT1G69260 | TAIR:AT1G69260 | RefSeq:AT1G69260-TAIR-G | EnsemblPlants:AT1G69260.1 |
| TAIR:AT1G69260.1 | EMBL:AY088834 | EMBL:AY136357 | Unigene:At.16506 | EMBL:BT000199 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009719 | GO:GO:0009738 | GO:GO:0009987 | InterPro:Jas | InterPro:NINJA_B | RefSeq:NP_564956.1 |
| InterPro:Ninja_fam | InterPro:Ninja_motif | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31413 |
| PANTHER:PTHR31413:SF6 | UniProt:Q9LQ98 | UniParc:UPI00000AC205 | SEG:seg | : | : |
Description
AFP1Ninja-family protein AFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ98]
Coordinates
chr1:+:26038905..26040720
Molecular Weight (calculated)
37533.0 Da
IEP (calculated)
8.652
GRAVY (calculated)
-0.760
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEANERSKE MARSNSCVFP RDLLQRFISN SVEGEDDDEE EDDDEIELNL GLSLGGRFGV DKSNKLVRSS SVVVTMPLFR EDHHHHQAAA MITTKVSTET
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.