Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026891.1-P | Field mustard | nucleus | 56.9 | 64.08 |
| CDY33807 | Canola | nucleus | 56.9 | 64.08 |
| CDY16104 | Canola | nucleus | 56.32 | 63.43 |
| Bra019706.1-P | Field mustard | nucleus | 57.47 | 63.29 |
| CDX98125 | Canola | nucleus | 57.47 | 62.7 |
| CDY36406 | Canola | nucleus | 48.28 | 57.53 |
| AT3G29575.1 | Thale cress | nucleus | 32.76 | 49.35 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 18.97 | 48.53 |
| AT1G69260.1 | Thale cress | nucleus | 39.37 | 39.71 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 40.8 | 39.44 |
| KRH75067 | Soybean | nucleus | 42.24 | 36.12 |
| KRH70923 | Soybean | nucleus | 41.67 | 35.28 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 33.91 | 34.91 |
| PGSC0003DMT400045906 | Potato | nucleus | 38.51 | 34.54 |
| HORVU4Hr1G035770.1 | Barley | plastid | 10.92 | 34.23 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 28.16 | 34.15 |
| Solyc04g005380.2.1 | Tomato | nucleus | 36.78 | 33.33 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 25.86 | 31.8 |
| PGSC0003DMT400072760 | Potato | nucleus | 37.07 | 31.39 |
| Os03t0214200-01 | Rice | nucleus | 32.76 | 28.43 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 13.79 | 28.24 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 36.78 | 27.65 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 17.82 | 27.43 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 18.97 | 27.27 |
| EER92642 | Sorghum | nucleus | 30.75 | 27.16 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 19.54 | 27.09 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 18.97 | 26.83 |
| EER89528 | Sorghum | nucleus | 27.3 | 26.61 |
| Zm00001d048085_P002 | Maize | nucleus | 28.74 | 25.45 |
| AT3G02140.1 | Thale cress | cytosol | 22.99 | 25.08 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 28.16 | 24.75 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 27.87 | 24.49 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 27.3 | 23.51 |
| AT3G07255.1 | Thale cress | nucleus | 18.68 | 22.18 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 28.74 | 19.57 |
Protein Annotations
| MapMan:15.5.53.3 | EntrezGene:837934 | UniProt:A0A178WBB1 | ProteinID:AAF81300.1 | ProteinID:AEE29062.1 | Symbol:AFP2 |
| ArrayExpress:AT1G13740 | EnsemblPlantsGene:AT1G13740 | RefSeq:AT1G13740 | TAIR:AT1G13740 | RefSeq:AT1G13740-TAIR-G | EnsemblPlants:AT1G13740.1 |
| TAIR:AT1G13740.1 | EMBL:AY056326 | EMBL:BT024887 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006950 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009719 |
| GO:GO:0009737 | GO:GO:0009987 | InterPro:Jas | InterPro:NINJA_B | RefSeq:NP_563933.1 | InterPro:Ninja_fam |
| InterPro:Ninja_motif | ProteinID:OAP14663.1 | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31413 |
| PANTHER:PTHR31413:SF6 | UniProt:Q9LMX5 | UniParc:UPI000009CBF7 | SEG:seg | : | : |
Description
AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
Coordinates
chr1:+:4713433..4715407
Molecular Weight (calculated)
38213.4 Da
IEP (calculated)
7.994
GRAVY (calculated)
-0.846
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.