Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019706.1-P | Field mustard | nucleus | 97.18 | 98.1 |
| CDY36406 | Canola | nucleus | 66.46 | 72.6 |
| CDY33807 | Canola | nucleus | 59.25 | 61.16 |
| CDY16104 | Canola | nucleus | 58.62 | 60.52 |
| AT1G13740.1 | Thale cress | nucleus | 62.7 | 57.47 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 20.06 | 47.06 |
| CDY00093 | Canola | nucleus | 36.05 | 45.28 |
| CDY19988 | Canola | nucleus | 35.74 | 44.71 |
| CDY44386 | Canola | nucleus | 34.48 | 43.82 |
| CDY04085 | Canola | nucleus | 34.17 | 43.78 |
| CDX86364 | Canola | nucleus | 36.05 | 43.07 |
| CDX85274 | Canola | nucleus | 35.42 | 42.64 |
| CDY04272 | Canola | nucleus | 41.07 | 37.86 |
| CDY07354 | Canola | nucleus | 40.75 | 37.46 |
| CDX95951 | Canola | nucleus | 39.19 | 37.2 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 40.75 | 36.11 |
| HORVU4Hr1G035770.1 | Barley | plastid | 12.23 | 35.14 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 36.05 | 34.02 |
| KRH70923 | Soybean | nucleus | 43.57 | 33.82 |
| KRH75067 | Soybean | nucleus | 42.63 | 33.42 |
| CDY40905 | Canola | nucleus | 36.36 | 33.24 |
| PGSC0003DMT400045906 | Potato | nucleus | 39.5 | 32.47 |
| Solyc04g005380.2.1 | Tomato | nucleus | 37.93 | 31.51 |
| PGSC0003DMT400072760 | Potato | nucleus | 40.13 | 31.14 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 27.9 | 31.01 |
| CDX74273 | Canola | mitochondrion | 25.71 | 30.04 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 26.65 | 30.04 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 15.67 | 29.41 |
| CDX91976 | Canola | mitochondrion | 25.71 | 28.77 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 24.14 | 27.9 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 19.44 | 27.43 |
| EER92642 | Sorghum | nucleus | 33.54 | 27.16 |
| CDY43256 | Canola | mitochondrion | 23.82 | 27.14 |
| Os03t0214200-01 | Rice | nucleus | 33.86 | 26.93 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 38.56 | 26.57 |
| EER89528 | Sorghum | nucleus | 29.15 | 26.05 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 19.44 | 25.62 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 20.06 | 25.5 |
| Zm00001d048085_P002 | Maize | nucleus | 31.35 | 25.45 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 19.44 | 25.2 |
| CDY34910 | Canola | peroxisome | 21.32 | 24.37 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 29.47 | 23.74 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 28.84 | 23.23 |
| CDY08008 | Canola | cytosol | 20.06 | 22.3 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 27.59 | 21.78 |
| CDX74054 | Canola | nucleus | 19.12 | 21.18 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 29.47 | 18.4 |
Protein Annotations
| EnsemblPlants:CDX98125 | EnsemblPlantsGene:GSBRNA2T00105510001 | GO:A0A078E7Q7 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | ncoils:Coil |
| PANTHER:PTHR31413 | PANTHER:PTHR31413:SF6 | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | ProteinID:CDX98125 |
| ProteinID:CDX98125.1 | SEG:seg | UniParc:UPI0004EE7011 | MapMan:15.5.53.3 | : | : |
Description
BnaA06g08760D
Coordinates
chrLK031902:+:1201976..1203336
Molecular Weight (calculated)
34732.4 Da
IEP (calculated)
7.782
GRAVY (calculated)
-0.883
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEASRQQQ RTWNNNRDMT LTTNLSLDIN KHPTDPSENG GETSDCEDHE LSLGLSLGGR FGVDKTPRKL KRSSSVLGAV LPFVSEPENN YAVGLARTTS
101: LPAEIEEEWR KRKEMQSARR MEAKKRRCEK QCFRGGDEQT SSFESERWVT ASKSGFLQRH LVSSVDSDGA RGGGGGSSSS LSELDNKNHQ QGSSNSCGAE
201: TSPKIMTRCS SNNSEIHGTE KHKGNEKGED DGKGKGKGTV PTSTGLFDMP CVFTKGDGPN GRRVDGILYK YGKVGEEVRI MCICHGSFLT PAEFVKHGGG
301: GDVDRPLRHI VVNTSPSTF
101: LPAEIEEEWR KRKEMQSARR MEAKKRRCEK QCFRGGDEQT SSFESERWVT ASKSGFLQRH LVSSVDSDGA RGGGGGSSSS LSELDNKNHQ QGSSNSCGAE
201: TSPKIMTRCS SNNSEIHGTE KHKGNEKGED DGKGKGKGTV PTSTGLFDMP CVFTKGDGPN GRRVDGILYK YGKVGEEVRI MCICHGSFLT PAEFVKHGGG
301: GDVDRPLRHI VVNTSPSTF
001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
Arabidopsis Description
AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.