Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033105.1-P | Field mustard | nucleus | 86.06 | 99.08 |
| CDY04085 | Canola | nucleus | 94.82 | 95.58 |
| CDY19988 | Canola | nucleus | 73.31 | 72.16 |
| AT3G29575.1 | Thale cress | nucleus | 66.14 | 71.86 |
| CDY00093 | Canola | nucleus | 72.51 | 71.65 |
| CDX85274 | Canola | nucleus | 72.11 | 68.3 |
| CDX86364 | Canola | nucleus | 72.51 | 68.16 |
| Solyc02g066850.1.1 | Tomato | cytosol | 17.13 | 65.15 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 31.47 | 58.09 |
| PGSC0003DMT400003712 | Potato | nucleus | 52.59 | 42.04 |
| Solyc02g088910.2.1 | Tomato | nucleus | 51.0 | 40.38 |
| PGSC0003DMT400036544 | Potato | cytosol | 20.32 | 40.16 |
| Solyc02g032710.1.1 | Tomato | cytosol | 20.32 | 37.78 |
| CDY33807 | Canola | nucleus | 46.22 | 37.54 |
| PGSC0003DMT400089614 | Potato | cytosol | 20.32 | 37.5 |
| Solyc02g032680.1.1 | Tomato | cytosol | 17.93 | 37.5 |
| CDY16104 | Canola | nucleus | 45.82 | 37.22 |
| CDY36406 | Canola | nucleus | 41.83 | 35.96 |
| Solyc02g066870.1.1 | Tomato | cytosol | 22.31 | 35.67 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 47.41 | 35.21 |
| HORVU4Hr1G035770.1 | Barley | plastid | 15.54 | 35.14 |
| CDX74273 | Canola | mitochondrion | 37.85 | 34.8 |
| CDX98125 | Canola | nucleus | 43.82 | 34.48 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 52.59 | 34.11 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 37.45 | 34.06 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 17.13 | 33.86 |
| CDX91976 | Canola | mitochondrion | 38.25 | 33.68 |
| KRH45047 | Soybean | nucleus | 51.0 | 33.42 |
| Solyc02g066860.1.1 | Tomato | cytosol | 17.13 | 33.08 |
| KRH01286 | Soybean | nucleus | 49.4 | 32.89 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 36.65 | 32.51 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 37.05 | 32.4 |
| CDX95951 | Canola | nucleus | 43.03 | 32.14 |
| CDY43256 | Canola | mitochondrion | 35.46 | 31.79 |
| CDY07354 | Canola | nucleus | 43.82 | 31.7 |
| Solyc02g030650.1.1 | Tomato | nucleus | 22.71 | 31.67 |
| Solyc02g030610.1.1 | Tomato | cytosol | 19.92 | 31.25 |
| CDY04272 | Canola | nucleus | 43.03 | 31.21 |
| Solyc02g032690.1.1 | Tomato | cytosol | 28.69 | 30.0 |
| CDY40905 | Canola | nucleus | 41.04 | 29.51 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 19.52 | 28.82 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 24.3 | 26.99 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 25.1 | 25.61 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 24.3 | 25.21 |
| Solyc02g032670.1.1 | Tomato | cytosol | 26.29 | 25.19 |
| Solyc02g030630.1.1 | Tomato | cytosol | 30.28 | 24.84 |
| Os03t0214200-01 | Rice | nucleus | 39.04 | 24.44 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 24.3 | 24.3 |
| EER92642 | Sorghum | nucleus | 37.85 | 24.11 |
| Solyc02g030620.1.1 | Tomato | cytosol | 28.29 | 23.99 |
| EER89528 | Sorghum | nucleus | 33.86 | 23.81 |
| CDY08008 | Canola | cytosol | 27.09 | 23.69 |
| CDX74054 | Canola | nucleus | 26.69 | 23.26 |
| Zm00001d048085_P002 | Maize | nucleus | 36.26 | 23.16 |
| Solyc01g058740.2.1 | Tomato | cytosol | 6.37 | 22.54 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 35.06 | 22.22 |
| CDY34910 | Canola | peroxisome | 24.7 | 22.22 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 34.66 | 21.97 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 33.47 | 20.79 |
| Solyc02g066900.1.1 | Tomato | cytosol | 25.9 | 20.5 |
| Solyc02g066890.1.1 | Tomato | cytosol | 28.29 | 19.78 |
| Solyc02g066840.1.1 | Tomato | cytosol | 11.55 | 19.33 |
| Solyc02g032720.1.1 | Tomato | cytosol | 25.9 | 17.57 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 35.46 | 17.42 |
| PGSC0003DMT400036545 | Potato | nucleus | 30.28 | 15.54 |
| Solyc02g030600.1.1 | Tomato | cytosol | 11.16 | 13.4 |
Protein Annotations
| EnsemblPlants:CDY44386 | EnsemblPlantsGene:GSBRNA2T00080055001 | GO:A0A078I3E3 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | ncoils:Coil |
| PANTHER:PTHR31413 | PANTHER:PTHR31413:SF6 | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | ProteinID:CDY44386 |
| ProteinID:CDY44386.1 | SEG:seg | UniParc:UPI0004EF23B0 | UniProt:A0A078I3E3 | MapMan:15.5.53.3 | : |
Description
BnaA02g29910DBnaA02g29910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I3E3]
Coordinates
chrLK032588:+:31423..32290
Molecular Weight (calculated)
27915.4 Da
IEP (calculated)
10.000
GRAVY (calculated)
-0.663
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEAEKRANG EIYRNIPRRD LLQSFMSKKQ KLSVQEGEVE IELDLGLSLN GRFGVDPLAN KRLLVRSPSI PDFVVNDVRS ELSRTFSLPV ETEELLRKRK
101: ELQSLRRLEA KRKRSEKQRN ARDQKHKADK IVEEGSSGSG SSGLSELDNA PPPPVQATTN KSKETSPSSA QSLPAARNII EDMPCVSTTG EGPNGKKIDG
201: FLYRYMKGQE VRIVCVCHGS FLTPAEFVKH AGGRDVTHPL KHIVVNPSPF L
101: ELQSLRRLEA KRKRSEKQRN ARDQKHKADK IVEEGSSGSG SSGLSELDNA PPPPVQATTN KSKETSPSSA QSLPAARNII EDMPCVSTTG EGPNGKKIDG
201: FLYRYMKGQE VRIVCVCHGS FLTPAEFVKH AGGRDVTHPL KHIVVNPSPF L
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
Arabidopsis Description
AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.