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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 2
  • cytosol 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g058740.2.1
Solyc02g030600.1.1
Solyc02g030610.1.1
Solyc02g030620.1.1
Solyc02g030630.1.1
Solyc02g030650.1.1
Solyc02g032670.1.1
Solyc02g032680.1.1
Solyc02g032690.1.1
Solyc02g032710.1.1
Solyc02g032720.1.1
Solyc02g066840.1.1
Solyc02g066850.1.1
Solyc02g066860.1.1
Solyc02g066870.1.1
Solyc02g066890.1.1
Solyc02g066900.1.1
Solyc02g088910.2.1
Solyc04g005380.2.1
Solyc05g012210.2.1
Solyc09g009490.2.1
Solyc10g076920.1.1
Solyc10g081350.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G02140.1 Solyc04g005380.2.1 AT1G13740.1 18484180
AT3G02140.1 Solyc05g012210.2.1 AT1G13740.1 18484180
AT3G02140.1 Solyc04g005380.2.1 AT1G69260.1 18484180
AT3G02140.1 Solyc05g012210.2.1 AT1G69260.1 18484180
AT3G02140.1 Solyc01g058740.2.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030600.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030610.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030620.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030630.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030650.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032670.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032680.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032690.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032710.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032720.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066840.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066850.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066860.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066870.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066890.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066900.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g088910.2.1 AT3G02140.1 18484180
AT3G02140.1 Solyc09g009490.2.1 AT3G44460.1 18484180
AT3G02140.1 Solyc10g076920.1.1 AT3G56850.1 18484180
AT3G02140.1 Solyc10g081350.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc04g005380.2.1 AT1G13740.1 18484180
AT3G29575.1 Solyc05g012210.2.1 AT1G13740.1 18484180
AT3G29575.1 Solyc04g005380.2.1 AT1G69260.1 18484180
AT3G29575.1 Solyc05g012210.2.1 AT1G69260.1 18484180
AT3G29575.1 Solyc01g058740.2.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030600.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030610.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030620.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030630.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030650.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032670.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032680.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032690.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032710.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032720.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066840.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066850.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066860.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066870.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066890.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066900.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g088910.2.1 AT3G29575.1 18484180
AT3G29575.1 Solyc09g009490.2.1 AT3G44460.1 18484180
AT3G29575.1 Solyc10g076920.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc10g081350.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc10g076920.1.1 AT3G56850.1 21798944
AT3G29575.1 Solyc10g081350.1.1 AT3G56850.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400036544 Potato cytosol 54.93 30.71
Solyc02g030610.1.1 Tomato cytosol 63.38 28.12
Solyc02g032680.1.1 Tomato cytosol 45.07 26.67
Solyc02g066860.1.1 Tomato cytosol 47.89 26.15
Solyc02g066850.1.1 Tomato cytosol 19.72 21.21
Solyc06g083290.1.1 Tomato cytosol, extracellular, plastid 15.49 16.18
Solyc02g032140.1.1 Tomato cytosol 21.13 12.1
GSMUA_Achr4P32830_001 Banana nucleus 22.54 11.76
Solyc02g030650.1.1 Tomato nucleus 29.58 11.67
Solyc02g032710.1.1 Tomato cytosol 21.13 11.11
HORVU4Hr1G035770.1 Barley plastid 15.49 9.91
Solyc02g066870.1.1 Tomato cytosol 21.13 9.55
Solyc02g032690.1.1 Tomato cytosol 26.76 7.92
Solyc02g032670.1.1 Tomato cytosol 28.17 7.63
AT3G29575.1 Thale cress nucleus 23.94 7.36
Bra033105.1-P Field mustard nucleus 22.54 7.34
CDY00093 Canola nucleus 23.94 6.69
Bra036210.1-P Field mustard nucleus 23.94 6.67
CDY19988 Canola nucleus 23.94 6.67
Solyc02g066900.1.1 Tomato cytosol 29.58 6.62
TraesCS3D01G532000.1 Wheat nucleus 15.49 6.47
CDY04085 Canola nucleus 22.54 6.43
Solyc02g030620.1.1 Tomato cytosol 26.76 6.42
CDX85274 Canola nucleus 23.94 6.42
CDY44386 Canola nucleus 22.54 6.37
Bra025400.1-P Field mustard nucleus 23.94 6.37
CDX86364 Canola nucleus 23.94 6.37
CDX74273 Canola mitochondrion 23.94 6.23
CDY68672 Canola cytosol, mitochondrion, nucleus, plastid 23.94 6.16
Bra039157.1-P Field mustard cytosol 23.94 6.14
GSMUA_Achr6P34980_001 Banana cytosol 23.94 6.01
Solyc02g030630.1.1 Tomato cytosol 25.35 5.88
Bra001031.1-P Field mustard mitochondrion 22.54 5.86
CDY43256 Canola mitochondrion 22.54 5.71
CDX91976 Canola mitochondrion 22.54 5.61
GSMUA_Achr5P01470_001 Banana nucleus 22.54 5.57
AT3G02140.1 Thale cress cytosol 23.94 5.33
GSMUA_Achr9P09330_001 Banana nucleus 25.35 5.33
TraesCS4A01G058100.1 Wheat nucleus 18.31 5.28
Solyc02g032720.1.1 Tomato cytosol 26.76 5.14
Solyc02g088910.2.1 Tomato nucleus 22.54 5.05
KRH01286 Soybean nucleus 26.76 5.04
Solyc02g066890.1.1 Tomato cytosol 25.35 5.01
TraesCS4B01G246800.1 Wheat nucleus 16.9 4.96
VIT_14s0068g00300.t01 Wine grape nucleus 26.76 4.91
TraesCS4D01G246100.2 Wheat nucleus 16.9 4.78
EER89528 Sorghum nucleus 23.94 4.76
KRH45047 Soybean nucleus 25.35 4.7
EER92642 Sorghum nucleus 25.35 4.57
Solyc04g005380.2.1 Tomato nucleus 23.94 4.43
TraesCS3B01G594200.1 Wheat cytosol 14.08 4.42
Os03t0214200-01 Rice nucleus 22.54 3.99
Solyc05g012210.2.1 Tomato extracellular, golgi 25.35 3.89
Zm00001d048085_P002 Maize nucleus 19.72 3.56
TraesCS4B01G247000.1 Wheat nucleus 19.72 3.54
TraesCS4D01G246400.1 Wheat nucleus 19.72 3.54
HORVU4Hr1G067930.1 Barley nucleus 19.72 3.47
Solyc02g066840.1.1 Tomato cytosol 7.04 3.33
TraesCS4A01G057800.1 Wheat cytosol, mitochondrion, nucleus, plastid 19.72 2.74
Solyc02g030600.1.1 Tomato cytosol 5.63 1.91
Protein Annotations
EnsemblPlants:Solyc01g058740.2.1EnsemblPlantsGene:Solyc01g058740.2UniParc:UPI000276212FUniProt:K4AW82MapMan:35.2:
Description
No Description!
Coordinates
chr1:+:68170068..68178902
Molecular Weight (calculated)
8264.0 Da
IEP (calculated)
9.212
GRAVY (calculated)
-0.618
Length
71 amino acids
Sequence
(BLAST)
1: MGNLICTRET NDNFKHTPWK SAKEVGEKLR IFLYKMPSVF YDGPNGKKTK GYLLYSFTKS ERFEDSLCLS C
Best Arabidopsis Sequence Match ( AT1G13740.1 )
(BLAST)
001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
Arabidopsis Description
AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.