Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g066850.1.1 | Tomato | cytosol | 19.05 | 66.67 |
| CDY04085 | Canola | nucleus | 71.43 | 66.27 |
| CDY00093 | Canola | nucleus | 72.73 | 66.14 |
| CDY44386 | Canola | nucleus | 71.86 | 66.14 |
| Bra036210.1-P | Field mustard | nucleus | 72.29 | 65.49 |
| CDY19988 | Canola | nucleus | 72.29 | 65.49 |
| Bra025400.1-P | Field mustard | nucleus | 73.16 | 63.3 |
| CDX86364 | Canola | nucleus | 73.16 | 63.3 |
| CDX85274 | Canola | nucleus | 71.43 | 62.26 |
| Bra033105.1-P | Field mustard | nucleus | 58.01 | 61.47 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 34.2 | 58.09 |
| Solyc02g088910.2.1 | Tomato | nucleus | 56.28 | 41.01 |
| PGSC0003DMT400003712 | Potato | nucleus | 54.55 | 40.13 |
| PGSC0003DMT400036544 | Potato | cytosol | 21.64 | 39.37 |
| PGSC0003DMT400089614 | Potato | cytosol | 22.51 | 38.24 |
| Solyc02g032710.1.1 | Tomato | cytosol | 22.08 | 37.78 |
| Solyc02g032680.1.1 | Tomato | cytosol | 19.48 | 37.5 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 53.25 | 36.39 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 19.91 | 36.22 |
| HORVU4Hr1G035770.1 | Barley | plastid | 17.32 | 36.04 |
| Solyc02g066870.1.1 | Tomato | cytosol | 24.24 | 35.67 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 56.28 | 33.59 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 40.69 | 33.22 |
| KRH01286 | Soybean | nucleus | 54.11 | 33.16 |
| Solyc02g066860.1.1 | Tomato | cytosol | 18.61 | 33.08 |
| AT1G13740.1 | Thale cress | nucleus | 49.35 | 32.76 |
| AT1G69260.1 | Thale cress | nucleus | 48.92 | 32.75 |
| Solyc02g030610.1.1 | Tomato | cytosol | 22.51 | 32.5 |
| Solyc02g030650.1.1 | Tomato | nucleus | 25.11 | 32.22 |
| KRH45047 | Soybean | nucleus | 53.25 | 32.11 |
| Solyc02g032690.1.1 | Tomato | cytosol | 32.9 | 31.67 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 38.53 | 31.01 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 22.08 | 30.0 |
| AT3G02140.1 | Thale cress | cytosol | 37.23 | 26.96 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 25.97 | 26.55 |
| Os03t0214200-01 | Rice | nucleus | 45.89 | 26.43 |
| Solyc02g030630.1.1 | Tomato | cytosol | 34.63 | 26.14 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 27.27 | 26.03 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 27.27 | 25.61 |
| Solyc02g032670.1.1 | Tomato | cytosol | 29.0 | 25.57 |
| Solyc02g030620.1.1 | Tomato | cytosol | 31.6 | 24.66 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 26.41 | 24.3 |
| AT3G07255.1 | Thale cress | nucleus | 30.74 | 24.23 |
| EER92642 | Sorghum | nucleus | 41.13 | 24.11 |
| Solyc01g058740.2.1 | Tomato | cytosol | 7.36 | 23.94 |
| EER89528 | Sorghum | nucleus | 36.36 | 23.53 |
| Solyc02g066900.1.1 | Tomato | cytosol | 30.74 | 22.4 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 38.1 | 22.22 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 37.66 | 21.97 |
| Zm00001d048085_P002 | Maize | nucleus | 37.23 | 21.88 |
| Solyc02g066890.1.1 | Tomato | cytosol | 32.03 | 20.61 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 35.5 | 20.3 |
| Solyc02g066840.1.1 | Tomato | cytosol | 12.99 | 20.0 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 38.96 | 17.61 |
| Solyc02g032720.1.1 | Tomato | cytosol | 27.27 | 17.03 |
| PGSC0003DMT400036545 | Potato | nucleus | 32.03 | 15.13 |
| Solyc02g030600.1.1 | Tomato | cytosol | 12.99 | 14.35 |
Protein Annotations
| MapMan:15.5.53.3 | EntrezGene:822619 | ProteinID:AEE77588.1 | ProteinID:AEE77589.1 | ProteinID:AEE77590.1 | EMBL:AF385741 |
| Symbol:AFP3 | EMBL:AK317411 | ArrayExpress:AT3G29575 | EnsemblPlantsGene:AT3G29575 | RefSeq:AT3G29575 | TAIR:AT3G29575 |
| RefSeq:AT3G29575-TAIR-G | EnsemblPlants:AT3G29575.1 | TAIR:AT3G29575.1 | EMBL:AY133676 | ProteinID:BAB01982.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | InterPro:Jas |
| InterPro:NINJA_B | RefSeq:NP_001030794.1 | RefSeq:NP_001078222.1 | RefSeq:NP_189598.1 | InterPro:Ninja_fam | InterPro:Ninja_motif |
| PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR31413 | PANTHER:PTHR31413:SF6 | UniProt:Q94F39 | UniParc:UPI000009D6B5 | SEG:seg |
Description
AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
Coordinates
chr3:-:11382214..11384145
Molecular Weight (calculated)
25244.9 Da
IEP (calculated)
7.980
GRAVY (calculated)
-0.618
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.