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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:mitochondrion, plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g058740.2.1
Solyc02g030600.1.1
Solyc02g030610.1.1
Solyc02g030620.1.1
Solyc02g030630.1.1
Solyc02g030650.1.1
Solyc02g032670.1.1
Solyc02g032680.1.1
Solyc02g032690.1.1
Solyc02g032710.1.1
Solyc02g032720.1.1
Solyc02g066840.1.1
Solyc02g066850.1.1
Solyc02g066860.1.1
Solyc02g066870.1.1
Solyc02g066890.1.1
Solyc02g066900.1.1
Solyc02g088910.2.1
Solyc04g005380.2.1
Solyc05g012210.2.1
Solyc09g009490.2.1
Solyc10g076920.1.1
Solyc10g081350.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G02140.1 Solyc04g005380.2.1 AT1G13740.1 18484180
AT3G02140.1 Solyc05g012210.2.1 AT1G13740.1 18484180
AT3G02140.1 Solyc04g005380.2.1 AT1G69260.1 18484180
AT3G02140.1 Solyc05g012210.2.1 AT1G69260.1 18484180
AT3G02140.1 Solyc01g058740.2.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030600.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030610.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030620.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030630.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030650.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032670.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032680.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032690.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032710.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032720.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066840.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066850.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066860.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066870.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066890.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066900.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g088910.2.1 AT3G02140.1 18484180
AT3G02140.1 Solyc09g009490.2.1 AT3G44460.1 18484180
AT3G02140.1 Solyc10g076920.1.1 AT3G56850.1 18484180
AT3G02140.1 Solyc10g081350.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc04g005380.2.1 AT1G13740.1 18484180
AT3G29575.1 Solyc05g012210.2.1 AT1G13740.1 18484180
AT3G29575.1 Solyc04g005380.2.1 AT1G69260.1 18484180
AT3G29575.1 Solyc05g012210.2.1 AT1G69260.1 18484180
AT3G29575.1 Solyc01g058740.2.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030600.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030610.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030620.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030630.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030650.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032670.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032680.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032690.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032710.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032720.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066840.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066850.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066860.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066870.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066890.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066900.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g088910.2.1 AT3G29575.1 18484180
AT3G29575.1 Solyc09g009490.2.1 AT3G44460.1 18484180
AT3G29575.1 Solyc10g076920.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc10g081350.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc10g076920.1.1 AT3G56850.1 21798944
AT3G29575.1 Solyc10g081350.1.1 AT3G56850.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g066850.1.1 Tomato cytosol 30.0 81.82
Solyc06g083290.1.1 Tomato cytosol, extracellular, plastid 17.78 47.06
Solyc02g032690.1.1 Tomato cytosol 50.0 37.5
Solyc02g032680.1.1 Tomato cytosol 23.89 35.83
GSMUA_Achr4P32830_001 Banana nucleus 25.56 33.82
Solyc02g032710.1.1 Tomato cytosol 24.44 32.59
Solyc02g066860.1.1 Tomato cytosol 23.33 32.31
HORVU4Hr1G035770.1 Barley plastid 18.89 30.63
Solyc02g030610.1.1 Tomato cytosol 26.67 30.0
Solyc02g066870.1.1 Tomato cytosol 26.11 29.94
Solyc01g058740.2.1 Tomato cytosol 11.67 29.58
Solyc02g030630.1.1 Tomato cytosol 49.44 29.09
Solyc02g030620.1.1 Tomato cytosol 47.78 29.05
Solyc02g032140.1.1 Tomato cytosol 20.0 29.03
Solyc02g032670.1.1 Tomato cytosol 37.78 25.95
AT3G29575.1 Thale cress nucleus 32.22 25.11
Solyc02g066900.1.1 Tomato cytosol 43.33 24.61
CDY04085 Canola nucleus 31.67 22.89
CDY44386 Canola nucleus 31.67 22.71
CDY00093 Canola nucleus 31.67 22.44
CDY19988 Canola nucleus 31.11 21.96
Bra036210.1-P Field mustard nucleus 31.11 21.96
TraesCS3D01G532000.1 Wheat nucleus 20.56 21.76
CDX85274 Canola nucleus 30.56 20.75
Bra025400.1-P Field mustard nucleus 29.44 19.85
CDX86364 Canola nucleus 29.44 19.85
CDX74273 Canola mitochondrion 29.44 19.41
TraesCS4B01G246800.1 Wheat nucleus 25.56 19.01
CDY68672 Canola cytosol, mitochondrion, nucleus, plastid 28.89 18.84
GSMUA_Achr5P01470_001 Banana nucleus 30.0 18.82
Bra001031.1-P Field mustard mitochondrion 28.33 18.68
Solyc02g066890.1.1 Tomato cytosol 37.22 18.66
Solyc02g032720.1.1 Tomato cytosol 38.33 18.65
Bra039157.1-P Field mustard cytosol 28.33 18.41
Solyc02g088910.2.1 Tomato nucleus 32.22 18.3
TraesCS3B01G594200.1 Wheat cytosol 22.78 18.14
CDX91976 Canola mitochondrion 28.33 17.89
Bra033105.1-P Field mustard nucleus 21.67 17.89
CDY43256 Canola mitochondrion 27.78 17.86
GSMUA_Achr9P09330_001 Banana nucleus 32.22 17.16
TraesCS4A01G058100.1 Wheat nucleus 23.33 17.07
KRH01286 Soybean nucleus 35.56 16.98
KRH45047 Soybean nucleus 34.44 16.19
TraesCS4D01G246100.2 Wheat nucleus 21.67 15.54
AT3G02140.1 Thale cress cytosol 27.22 15.36
GSMUA_Achr6P34980_001 Banana cytosol 23.33 14.84
Os03t0214200-01 Rice nucleus 32.78 14.71
Solyc04g005380.2.1 Tomato nucleus 30.56 14.32
Zm00001d048085_P002 Maize nucleus 31.11 14.25
VIT_14s0068g00300.t01 Wine grape nucleus 30.56 14.21
EER89528 Sorghum nucleus 27.22 13.73
EER92642 Sorghum nucleus 29.44 13.45
Solyc05g012210.2.1 Tomato extracellular, golgi 32.78 12.74
TraesCS4D01G246400.1 Wheat nucleus 27.78 12.63
HORVU4Hr1G067930.1 Barley nucleus 27.78 12.38
TraesCS4B01G247000.1 Wheat nucleus 26.67 12.12
TraesCS4A01G057800.1 Wheat cytosol, mitochondrion, nucleus, plastid 27.78 9.78
Solyc02g066840.1.1 Tomato cytosol 7.78 9.33
Solyc02g030600.1.1 Tomato cytosol 6.67 5.74
Protein Annotations
EnsemblPlants:Solyc02g030650.1.1EnsemblPlantsGene:Solyc02g030650.1GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009987
InterPro:JasInterPro:Ninja_famPANTHER:PTHR31413PANTHER:PTHR31413:SF10PFAM:PF16135SEG:seg
UniParc:UPI0002768DD5UniProt:K4B5B3MapMan:15.5.53.3:::
Description
No Description!
Coordinates
chr2:+:26612724..26613379
Molecular Weight (calculated)
19311.6 Da
IEP (calculated)
6.007
GRAVY (calculated)
-0.474
Length
180 amino acids
Sequence
(BLAST)
001: MRGDTQQNRW DKLKNVIVVE ENEGNGTSSL PSPGGSESVG SFGSSGTSSE TQQHLPNQVD GTFIEGASSS SNEIPPVSGT LEQMRHLVLA AIEATNEQSP
101: HFSGKEGLRN FLLKMPGVFT KGDGPNGKKT EGFLYAYKRG GEVKIVCIFH GYFLTPTEFV KHAGGCAVEN PLRLLTVDPN
Best Arabidopsis Sequence Match ( AT3G29575.1 )
(BLAST)
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
Arabidopsis Description
AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.