Factsheet for Bra025400.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003253.1-P
Bra004004.1-P
Bra004368.1-P
Bra007274.1-P
Bra007276.1-P
Bra014668.1-P
Bra019436.1-P
Bra019706.1-P
Bra025400.1-P
Bra026891.1-P
Bra033105.1-P
Bra036210.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G29575.1	Bra019706.1-P	AT1G13740.1	18484180
AT3G29575.1	Bra026891.1-P	AT1G13740.1	18484180
AT3G29575.1	Bra004004.1-P	AT1G69260.1	18484180
AT3G29575.1	Bra004368.1-P	AT1G69260.1	18484180
AT3G29575.1	Bra025400.1-P	AT3G29575.1	18484180
AT3G29575.1	Bra033105.1-P	AT3G29575.1	18484180
AT3G29575.1	Bra036210.1-P	AT3G29575.1	18484180
AT3G29575.1	Bra019436.1-P	AT3G44460.1	18484180
AT3G29575.1	Bra003253.1-P	AT3G56850.1	18484180
AT3G29575.1	Bra007274.1-P	AT3G56850.1	18484180
AT3G29575.1	Bra007276.1-P	AT3G56850.1	18484180
AT3G29575.1	Bra014668.1-P	AT3G56850.1	18484180
AT3G29575.1	Bra003253.1-P	AT3G56850.1	21798944
AT3G29575.1	Bra007274.1-P	AT3G56850.1	21798944
AT3G29575.1	Bra007276.1-P	AT3G56850.1	21798944
AT3G29575.1	Bra014668.1-P	AT3G56850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86364	Canola	nucleus	100.0	100.0
Bra036210.1-P	Field mustard	nucleus	74.16	77.65
AT3G29575.1	Thale cress	nucleus	63.3	73.16
Bra033105.1-P	Field mustard	nucleus	56.18	68.81
Solyc02g066850.1.1	Tomato	cytosol	16.1	65.15
Bra027018.1-P	Field mustard	cytosol	12.73	57.63
GSMUA_Achr4P32830_001	Banana	nucleus	28.46	55.88
PGSC0003DMT400003712	Potato	nucleus	52.81	44.9
Solyc02g088910.2.1	Tomato	nucleus	51.31	43.22
PGSC0003DMT400036544	Potato	cytosol	18.73	39.37
Bra026891.1-P	Field mustard	nucleus	44.19	38.19
PGSC0003DMT400089614	Potato	cytosol	18.73	36.76
Solyc02g032680.1.1	Tomato	cytosol	16.48	36.67
Bra019706.1-P	Field mustard	nucleus	42.7	36.08
GSMUA_Achr9P09330_001	Banana	nucleus	45.32	35.8
VIT_14s0068g00300.t01	Wine grape	nucleus	51.69	35.66
Solyc02g032710.1.1	Tomato	cytosol	17.98	35.56
Bra039157.1-P	Field mustard	cytosol	36.33	35.02
KRH01286	Soybean	nucleus	49.06	34.75
HORVU4Hr1G035770.1	Barley	plastid	14.23	34.23
KRH45047	Soybean	nucleus	48.69	33.94
PGSC0003DMT400095238	Potato	cytosol, mitochondrion	16.1	33.86
Solyc02g066870.1.1	Tomato	cytosol	19.85	33.76
Bra001031.1-P	Field mustard	mitochondrion	34.08	33.33
Bra004368.1-P	Field mustard	nucleus	40.45	33.13
GSMUA_Achr6P34980_001	Banana	cytosol	34.46	32.51
Bra004004.1-P	Field mustard	nucleus	41.95	32.37
Solyc02g066860.1.1	Tomato	cytosol	15.73	32.31
Solyc02g032690.1.1	Tomato	cytosol	28.84	32.08
GSMUA_Achr5P01470_001	Banana	nucleus	34.46	32.06
Solyc02g030610.1.1	Tomato	cytosol	18.35	30.62
Solyc02g030650.1.1	Tomato	nucleus	19.85	29.44
TraesCS3B01G594200.1	Wheat	cytosol	24.34	28.76
Solyc02g032670.1.1	Tomato	cytosol	26.97	27.48
TraesCS3D01G532000.1	Wheat	nucleus	17.23	27.06
Solyc02g030630.1.1	Tomato	cytosol	30.71	26.8
Bra001242.1-P	Field mustard	nucleus	28.46	26.39
Os03t0214200-01	Rice	nucleus	39.33	26.18
Solyc02g030620.1.1	Tomato	cytosol	28.84	26.01
EER89528	Sorghum	nucleus	33.71	25.21
TraesCS4B01G246800.1	Wheat	nucleus	22.47	24.79
EER92642	Sorghum	nucleus	36.33	24.62
TraesCS4A01G058100.1	Wheat	nucleus	22.47	24.39
Bra040367.1-P	Field mustard	nucleus	25.47	24.37
Solyc01g058740.2.1	Tomato	cytosol	6.37	23.94
TraesCS4D01G246400.1	Wheat	nucleus	34.83	23.48
TraesCS4B01G247000.1	Wheat	nucleus	34.46	23.23
Zm00001d048085_P002	Maize	nucleus	34.08	23.16
TraesCS4D01G246100.2	Wheat	nucleus	21.35	22.71
HORVU4Hr1G067930.1	Barley	nucleus	32.96	21.78
Solyc02g066900.1.1	Tomato	cytosol	25.47	21.45
Solyc02g066890.1.1	Tomato	cytosol	28.09	20.89
Solyc02g066840.1.1	Tomato	cytosol	11.24	20.0
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	36.33	18.98
Solyc02g032720.1.1	Tomato	cytosol	25.09	18.11
PGSC0003DMT400036545	Potato	nucleus	29.21	15.95
Solyc02g030600.1.1	Tomato	cytosol	10.49	13.4

Protein Annotations

EnsemblPlants:Bra025400.1	EnsemblPlants:Bra025400.1-P	EnsemblPlantsGene:Bra025400	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Jas	InterPro:NINJA_B	InterPro:Ninja_fam	InterPro:Ninja_motif	ncoils:Coil
PANTHER:PTHR31413	PANTHER:PTHR31413:SF6	PFAM:PF07897	PFAM:PF16135	PFAM:PF16136	SEG:seg
UniParc:UPI000253FA75	UniProt:M4E9E4	MapMan:15.5.53.3	:	:	:

Description

AT3G29575 (E=6e-083) AFP3 | AFP3 (ABI FIVE BINDING PROTEIN 3)

Coordinates

chrA06:+:21807260..21808394

Molecular Weight (calculated)

29485.2 Da

IEP (calculated)

9.691

GRAVY (calculated)

-0.654

Length

267 amino acids

Sequence
(BLAST)

001: MSEAEKREDG KIYRNIPRPI SRDLLQSFMS KKNKNMSVED GEVEIELDLG LSLNGRFGVD PLAKTRLLTR SSSIPDFVVN DGRSELLSRT CSLPVETEEW
101: RKRKELQSLR RLEAKRKRFE KQRNVRVLRE KHKTGAGGGG REEKIVEEGS IGSSGSGSSG LSELDNTPPP PPVHATTNKS VETSPPITAP AARNIIEDMP
201: CVSTTGDGPN GKKIDGFLYR YRKGQEVRIV CVCHGSFLSP AEFIKHAGGS DVTHPLKHIV VNPSPFL

Best Arabidopsis Sequence Match ( AT3G29575.3 )
(BLAST)

001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L

Arabidopsis Description

AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.