Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74054 | Canola | nucleus | 98.26 | 98.26 |
| Bra027018.1-P | Field mustard | cytosol | 18.4 | 89.83 |
| Solyc06g083290.1.1 | Tomato | cytosol, extracellular, plastid | 13.89 | 58.82 |
| AT3G07255.1 | Thale cress | nucleus | 53.47 | 52.56 |
| Bra040367.1-P | Field mustard | nucleus | 47.57 | 49.1 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 15.97 | 33.82 |
| HORVU4Hr1G035770.1 | Barley | plastid | 11.81 | 30.63 |
| Bra036210.1-P | Field mustard | nucleus | 25.35 | 28.63 |
| Bra025400.1-P | Field mustard | nucleus | 26.39 | 28.46 |
| PGSC0003DMT400051959 | Potato | nucleus | 22.57 | 25.29 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 14.58 | 24.71 |
| Bra039157.1-P | Field mustard | cytosol | 22.22 | 23.1 |
| Bra026891.1-P | Field mustard | nucleus | 24.31 | 22.65 |
| Bra033105.1-P | Field mustard | nucleus | 17.01 | 22.48 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 22.22 | 22.3 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 18.4 | 21.9 |
| Bra001031.1-P | Field mustard | mitochondrion | 20.49 | 21.61 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 21.18 | 21.55 |
| KRH07456 | Soybean | nucleus | 26.04 | 21.43 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 18.06 | 21.14 |
| Bra004368.1-P | Field mustard | nucleus | 23.61 | 20.86 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 16.32 | 20.8 |
| KRH66123 | Soybean | nucleus | 25.35 | 20.62 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 23.61 | 20.12 |
| VIT_00s0216g00060.t01 | Wine grape | nucleus | 25.0 | 20.11 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 17.36 | 19.92 |
| Bra019706.1-P | Field mustard | nucleus | 21.53 | 19.62 |
| Bra004004.1-P | Field mustard | nucleus | 23.26 | 19.36 |
| Zm00001d048085_P002 | Maize | nucleus | 22.92 | 16.79 |
| Os03t0214200-01 | Rice | nucleus | 23.26 | 16.71 |
| EER92642 | Sorghum | nucleus | 21.53 | 15.74 |
| EER89528 | Sorghum | nucleus | 18.75 | 15.13 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 19.79 | 14.39 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 19.44 | 13.86 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 18.75 | 13.64 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 19.79 | 11.15 |
Protein Annotations
| EnsemblPlants:Bra001242.1 | EnsemblPlants:Bra001242.1-P | EnsemblPlantsGene:Bra001242 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:Jas | InterPro:Ninja_fam | InterPro:Ninja_motif | PANTHER:PTHR31413 | PFAM:PF07897 |
| PFAM:PF16135 | SEG:seg | UniParc:UPI0002540465 | UniProt:M4CAL3 | MapMan:15.5.53.3 | : |
Description
AT3G07250 (E=3e-087) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein
Coordinates
chrA03:-:15485968..15487362
Molecular Weight (calculated)
30600.9 Da
IEP (calculated)
5.780
GRAVY (calculated)
-0.585
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVESSSMAT KIGKEEDVEV ELELCLSLGG PFKKSDKAII MRCANDIGVD LNDGTTTYEV KETGKKREAK QQQRSRGEGG ECKRIKTECK KATNGVDLGL
101: SFGDMGNGYG SGRYKENSKD VTIGSPISST SDVSDPSSSP CQEGGTSELG ENPDQTKPVR FPVNNTLTGT EGTVRITDGP NDAVVEETQE CSNSIAKETG
201: KPPKPRPNSN GVNGSLLPFA KMPCVTSTGN GPDGKTVNGF LYRYSKSEIS IICVCHGTSF SPAEFILHAG GTHVPNPLRH ITVVPSTF
101: SFGDMGNGYG SGRYKENSKD VTIGSPISST SDVSDPSSSP CQEGGTSELG ENPDQTKPVR FPVNNTLTGT EGTVRITDGP NDAVVEETQE CSNSIAKETG
201: KPPKPRPNSN GVNGSLLPFA KMPCVTSTGN GPDGKTVNGF LYRYSKSEIS IICVCHGTSF SPAEFILHAG GTHVPNPLRH ITVVPSTF
001: MFVESLSMAE KFVEDENVEV ELELELCLSL GGPFKKTEKS KTFGQSNAVG FEKDNGVNLD GRTTNVTRIK ETRKKREAKQ QQRSGEEGEC KRIRTEYNGV
101: SNGDDMDLSS INMCNGYGSG RLKESSKDVT IGSPICTSSS VSDPSSSSRQ EGGSGDIGAQ SGQTKQVRSP VNNILTGTEQ TVHNTDGSKD AETQEWSNSS
201: VTKESGKPPK PHTNSNGNGS LLPFAQMPCV TSTGNGPEGK TVNGFLYRYS KSEISIICVC HGTSFSPAEF IVHAGGTNVS HPLRHITVVP STL
101: SNGDDMDLSS INMCNGYGSG RLKESSKDVT IGSPICTSSS VSDPSSSSRQ EGGSGDIGAQ SGQTKQVRSP VNNILTGTEQ TVHNTDGSKD AETQEWSNSS
201: VTKESGKPPK PHTNSNGNGS LLPFAQMPCV TSTGNGPEGK TVNGFLYRYS KSEISIICVC HGTSFSPAEF IVHAGGTNVS HPLRHITVVP STL
Arabidopsis Description
Nuclear transport factor 2/RNA recognition motif protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNF2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.