Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G246400.1 | Wheat | nucleus | 83.84 | 83.84 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 91.16 | 70.65 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 63.89 | 62.62 |
| Solyc02g066850.1.1 | Tomato | cytosol | 8.84 | 53.03 |
| Solyc06g083290.1.1 | Tomato | cytosol, extracellular, plastid | 8.33 | 48.53 |
| Bra027018.1-P | Field mustard | cytosol | 7.07 | 47.46 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 26.52 | 43.39 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 23.23 | 40.71 |
| AT3G29575.1 | Thale cress | nucleus | 21.97 | 37.66 |
| Os03t0214200-01 | Rice | nucleus | 37.12 | 36.66 |
| CDY00093 | Canola | nucleus | 23.48 | 36.61 |
| Bra036210.1-P | Field mustard | nucleus | 23.48 | 36.47 |
| CDY19988 | Canola | nucleus | 23.48 | 36.47 |
| CDY04085 | Canola | nucleus | 21.97 | 34.94 |
| CDY44386 | Canola | nucleus | 21.97 | 34.66 |
| Bra025400.1-P | Field mustard | nucleus | 23.23 | 34.46 |
| CDX86364 | Canola | nucleus | 23.23 | 34.46 |
| CDX85274 | Canola | nucleus | 22.98 | 34.34 |
| GSMUA_Achr3P30390_001 | Banana | nucleus | 28.28 | 33.84 |
| GSMUA_Achr4P14370_001 | Banana | nucleus | 28.03 | 33.13 |
| Bra026891.1-P | Field mustard | nucleus | 24.75 | 31.72 |
| CDY33807 | Canola | nucleus | 24.75 | 31.72 |
| PGSC0003DMT400036544 | Potato | cytosol | 10.1 | 31.5 |
| Zm00001d048085_P002 | Maize | nucleus | 31.06 | 31.3 |
| EER92642 | Sorghum | nucleus | 31.06 | 31.22 |
| CDY16104 | Canola | nucleus | 24.24 | 31.07 |
| CDY36406 | Canola | nucleus | 22.73 | 30.82 |
| TraesCS2B01G202700.2 | Wheat | nucleus | 24.49 | 30.7 |
| GSMUA_Achr7P26660_001 | Banana | nucleus | 27.27 | 30.59 |
| Solyc02g088910.2.1 | Tomato | nucleus | 23.74 | 29.65 |
| Solyc02g032710.1.1 | Tomato | cytosol | 10.1 | 29.63 |
| GSMUA_Achr6P27430_001 | Banana | nucleus | 26.52 | 29.58 |
| Bra004004.1-P | Field mustard | nucleus | 25.76 | 29.48 |
| Bra019706.1-P | Field mustard | nucleus | 23.48 | 29.43 |
| EER89528 | Sorghum | nucleus | 26.52 | 29.41 |
| CDY07354 | Canola | nucleus | 25.51 | 29.11 |
| PGSC0003DMT400003712 | Potato | nucleus | 22.98 | 28.98 |
| CDX98125 | Canola | nucleus | 23.23 | 28.84 |
| GSMUA_Achr3P15940_001 | Banana | nucleus | 25.25 | 28.65 |
| CDY04272 | Canola | nucleus | 25.0 | 28.61 |
| Bra033105.1-P | Field mustard | nucleus | 15.66 | 28.44 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 25.76 | 28.33 |
| CDX74273 | Canola | mitochondrion | 19.44 | 28.21 |
| Bra039157.1-P | Field mustard | cytosol | 19.7 | 28.16 |
| AT1G69260.1 | Thale cress | nucleus | 24.49 | 28.12 |
| AT1G13740.1 | Thale cress | nucleus | 24.49 | 27.87 |
| KRH54707 | Soybean | nucleus | 17.42 | 27.71 |
| Solyc02g066860.1.1 | Tomato | cytosol | 9.09 | 27.69 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 19.19 | 27.54 |
| Solyc02g032680.1.1 | Tomato | cytosol | 8.33 | 27.5 |
| Solyc02g032140.1.1 | Tomato | cytosol | 8.59 | 27.42 |
| PGSC0003DMT400045906 | Potato | nucleus | 26.77 | 27.32 |
| Solyc02g066870.1.1 | Tomato | cytosol | 10.61 | 26.75 |
| Bra001031.1-P | Field mustard | mitochondrion | 18.43 | 26.74 |
| Solyc02g030650.1.1 | Tomato | nucleus | 12.12 | 26.67 |
| KRH01286 | Soybean | nucleus | 25.25 | 26.53 |
| CDY43256 | Canola | mitochondrion | 18.69 | 26.43 |
| CDY40905 | Canola | nucleus | 23.23 | 26.36 |
| KRH63223 | Soybean | nucleus | 17.17 | 26.15 |
| KRH75067 | Soybean | nucleus | 26.77 | 26.04 |
| CDX91976 | Canola | mitochondrion | 18.69 | 25.96 |
| Bra004368.1-P | Field mustard | nucleus | 21.21 | 25.77 |
| KRH45047 | Soybean | nucleus | 24.75 | 25.59 |
| KRH70923 | Soybean | nucleus | 26.26 | 25.3 |
| Solyc04g005380.2.1 | Tomato | nucleus | 24.49 | 25.26 |
| PGSC0003DMT400089614 | Potato | cytosol | 8.59 | 25.0 |
| CDX95951 | Canola | nucleus | 21.21 | 25.0 |
| Solyc02g032690.1.1 | Tomato | cytosol | 15.15 | 25.0 |
| Solyc02g030610.1.1 | Tomato | cytosol | 10.1 | 25.0 |
| PGSC0003DMT400072760 | Potato | nucleus | 25.76 | 24.82 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 23.99 | 24.55 |
| GSMUA_Achr9P07070_001 | Banana | mitochondrion | 26.01 | 24.18 |
| AT3G02140.1 | Thale cress | cytosol | 19.19 | 23.82 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 7.58 | 23.62 |
| Solyc02g032670.1.1 | Tomato | cytosol | 15.15 | 22.9 |
| Solyc02g030620.1.1 | Tomato | cytosol | 16.92 | 22.64 |
| KRH56804 | Soybean | nucleus | 15.91 | 22.34 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 25.51 | 21.81 |
| KRH03141 | Soybean | nucleus | 12.63 | 21.28 |
| CDY34910 | Canola | peroxisome | 14.65 | 20.79 |
| Bra040367.1-P | Field mustard | nucleus | 14.65 | 20.79 |
| Solyc02g030630.1.1 | Tomato | cytosol | 15.91 | 20.59 |
| VIT_00s0216g00060.t01 | Wine grape | nucleus | 17.93 | 19.83 |
| AT3G07255.1 | Thale cress | nucleus | 14.65 | 19.8 |
| Solyc01g058740.2.1 | Tomato | cytosol | 3.54 | 19.72 |
| PGSC0003DMT400051959 | Potato | nucleus | 12.63 | 19.46 |
| Solyc02g066890.1.1 | Tomato | cytosol | 17.42 | 19.22 |
| CDY08008 | Canola | cytosol | 13.89 | 19.16 |
| CDX74054 | Canola | nucleus | 13.64 | 18.75 |
| Bra001242.1-P | Field mustard | nucleus | 13.64 | 18.75 |
| KRH66123 | Soybean | nucleus | 16.67 | 18.64 |
| Solyc02g066900.1.1 | Tomato | cytosol | 14.9 | 18.61 |
| KRH07456 | Soybean | nucleus | 15.91 | 18.0 |
| Solyc02g032720.1.1 | Tomato | cytosol | 16.16 | 17.3 |
| Solyc02g066840.1.1 | Tomato | cytosol | 6.31 | 16.67 |
| PGSC0003DMT400091590 | Potato | cytosol | 16.16 | 15.69 |
| VIT_17s0000g05280.t01 | Wine grape | nucleus | 16.41 | 15.22 |
| PGSC0003DMT400036545 | Potato | nucleus | 16.41 | 13.29 |
| Solyc02g030600.1.1 | Tomato | cytosol | 5.81 | 11.0 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G247000.1 | EnsemblPlantsGene:TraesCS4B01G247000 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | PANTHER:PTHR31413 | PANTHER:PTHR31413:SF6 |
| PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | SEG:seg | MapMan:15.5.53.3 | : |
Description
No Description!
Coordinates
chr4B:-:511162306..511168995
Molecular Weight (calculated)
41085.6 Da
IEP (calculated)
10.435
GRAVY (calculated)
-0.421
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAYSRDLLR GVGGGGETGR GEEKPRRLDS QAEEVELSLG LSLGGRFGQE RRRGEGLARS SSVACIQQVA PAPPALPRTS SLPPMAEAEA GNNAASPRSG
101: AEVQPQGSGV ALNGVVVEPA ALPRARLSPP STGSSGGVGK LRASVSPPST GSSDGEGILV RTSSLPAGIE DGWRKRKLAE TLNKLEMKRS IDRMNSSNVS
201: VGEVGENPDE MSEQAGGKAT VQRMNRTNVR RRLSGLPPPY QPPAASQGPK RNSALKGTPG TLGRSLSSAV LPSSVGANSS AVATSSSSAL AVRAAAPGIS
301: IGEQKDGSEW PAARATRTRS VADMVRKMPV VYTSGLRNGE RIDGFLYQYS RAEEVRIVCV CHGSFLTPAE FVAHAGGGEV AHPMRHIVVN PPSSSL
101: AEVQPQGSGV ALNGVVVEPA ALPRARLSPP STGSSGGVGK LRASVSPPST GSSDGEGILV RTSSLPAGIE DGWRKRKLAE TLNKLEMKRS IDRMNSSNVS
201: VGEVGENPDE MSEQAGGKAT VQRMNRTNVR RRLSGLPPPY QPPAASQGPK RNSALKGTPG TLGRSLSSAV LPSSVGANSS AVATSSSSAL AVRAAAPGIS
301: IGEQKDGSEW PAARATRTRS VADMVRKMPV VYTSGLRNGE RIDGFLYQYS RAEEVRIVCV CHGSFLTPAE FVAHAGGGEV AHPMRHIVVN PPSSSL
001: MAEANERSKE MARSNSCVFP RDLLQRFISN SVEGEDDDEE EDDDEIELNL GLSLGGRFGV DKSNKLVRSS SVVVTMPLFR EDHHHHQAAA MITTKVSTET
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
Arabidopsis Description
AFP1Ninja-family protein AFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.