Factsheet for GSMUA_Achr4P14370_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P30390_001	Banana	nucleus	58.51	59.21
GSMUA_Achr4P32830_001	Banana	nucleus	22.69	55.88
GSMUA_Achr7P26660_001	Banana	nucleus	58.81	55.81
GSMUA_Achr3P15940_001	Banana	nucleus	48.36	46.42
GSMUA_Achr9P09330_001	Banana	nucleus	41.19	40.83
GSMUA_Achr5P01470_001	Banana	nucleus	34.93	40.77
GSMUA_Achr6P27430_001	Banana	nucleus	41.79	39.44
HORVU4Hr1G035770.1	Barley	plastid	12.84	38.74
GSMUA_Achr9P07070_001	Banana	mitochondrion	45.07	35.45
GSMUA_Achr6P34980_001	Banana	cytosol	29.25	34.63
Os03t0214200-01	Rice	nucleus	40.0	33.42
TraesCS3D01G532000.1	Wheat	nucleus	16.12	31.76
EER92642	Sorghum	nucleus	37.31	31.73
Zm00001d048085_P002	Maize	nucleus	35.22	30.03
TraesCS3B01G594200.1	Wheat	cytosol	20.0	29.65
TraesCS4D01G246400.1	Wheat	nucleus	34.03	28.79
EER89528	Sorghum	nucleus	30.45	28.57
TraesCS4B01G246800.1	Wheat	nucleus	20.3	28.1
TraesCS4A01G058100.1	Wheat	nucleus	20.6	28.05
TraesCS4B01G247000.1	Wheat	nucleus	33.13	28.03
HORVU4Hr1G067930.1	Barley	nucleus	32.84	27.23
TraesCS4D01G246100.2	Wheat	nucleus	19.1	25.5
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	34.93	22.9

Protein Annotations

EnsemblPlants:GSMUA_Achr4P14370_001	EnsemblPlants:GSMUA_Achr4T14370_001	EnsemblPlantsGene:GSMUA_Achr4G14370_001	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Jas	InterPro:NINJA_B	InterPro:Ninja_fam	InterPro:Ninja_motif	ncoils:Coil
PANTHER:PTHR31413	PANTHER:PTHR31413:SF6	PFAM:PF07897	PFAM:PF16135	PFAM:PF16136	SEG:seg
UniParc:UPI000294FD3B	UniProt:M0SNV2	MapMan:15.5.53.3	:	:	:

Description

Putative Ninja-family protein 3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G14370_001]

Coordinates

chr4:-:10756398..10757532

Molecular Weight (calculated)

35904.6 Da

IEP (calculated)

9.860

GRAVY (calculated)

-0.530

Length

335 amino acids

Sequence
(BLAST)

001: MEGEAAKGGT ERLLLGMERS ARDFLRRFVG NGYGDETTEV TEGDSDEIEL SLGLSLGGCF GADPKGKKLV RSSSIASFTS LPWEPEFPVV PAAALTRTSS
101: LPTETEEERR KRKEMQSFKR LEAKRKRLER RNSIRSGAAK AGEKPDEEVT GSMATAAADH VAGARNGVTP PGLPAWTVGG SKRAAARPVD VPGNFPPISH
201: GSLGSQGSST AGACALGNRA PQGFGMTETK NSSMIHSAGN ETSTKQVAVR ANGIKEMERK MMEKMPFVST RGDGPNGRRI EGFLYKYRKG EEVRIVCVCH
301: GSFLTPAEFV KHAGGHDVTN PLRHIVVNSS PFSLL

Best Arabidopsis Sequence Match ( AT1G69260.1 )
(BLAST)

001: MAEANERSKE MARSNSCVFP RDLLQRFISN SVEGEDDDEE EDDDEIELNL GLSLGGRFGV DKSNKLVRSS SVVVTMPLFR EDHHHHQAAA MITTKVSTET
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL

Arabidopsis Description

AFP1Ninja-family protein AFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.